miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 5142 1.1 0.000219
Target:  5'- cGCGCGCCGCCGCGAGCGCACGUACCAu -3'
miRNA:   3'- -CGCGCGGCGGCGCUCGCGUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 9528 0.82 0.027298
Target:  5'- uGCGCGCCG-CGuCGAGCGCGCGcACCGu -3'
miRNA:   3'- -CGCGCGGCgGC-GCUCGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 46296 0.79 0.047882
Target:  5'- cUGCGCa--CGCGAGCGCGCGUGCCc -3'
miRNA:   3'- cGCGCGgcgGCGCUCGCGUGCAUGGu -5'
12103 5' -61.8 NC_003309.1 + 12067 0.77 0.063243
Target:  5'- cGCGgGCCGCCGCG-GCGUugGUGg-- -3'
miRNA:   3'- -CGCgCGGCGGCGCuCGCGugCAUggu -5'
12103 5' -61.8 NC_003309.1 + 10595 0.76 0.078863
Target:  5'- cGCGUGCCGUCGCGAcauGCGCuuGcGCCGc -3'
miRNA:   3'- -CGCGCGGCGGCGCU---CGCGugCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 10471 0.75 0.095241
Target:  5'- cGCGCGCaUGCCGCGAGUucggccuGCGC-UGCCGc -3'
miRNA:   3'- -CGCGCG-GCGGCGCUCG-------CGUGcAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 44177 0.75 0.095501
Target:  5'- gGCGCGCUGCCGCucGGCGUACGcgACgAg -3'
miRNA:   3'- -CGCGCGGCGGCGc-UCGCGUGCa-UGgU- -5'
12103 5' -61.8 NC_003309.1 + 11986 0.74 0.109365
Target:  5'- cGCGCGCggcaGCCGCG-GCGCGC--GCCGc -3'
miRNA:   3'- -CGCGCGg---CGGCGCuCGCGUGcaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 22100 0.73 0.121793
Target:  5'- uUGUGCUGCCGCaguaGGCGCGCGgcCCGa -3'
miRNA:   3'- cGCGCGGCGGCGc---UCGCGUGCauGGU- -5'
12103 5' -61.8 NC_003309.1 + 19498 0.72 0.14291
Target:  5'- uCGCGUCGUCGCGAuucgGCGUGCGgcugUACCAg -3'
miRNA:   3'- cGCGCGGCGGCGCU----CGCGUGC----AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 2459 0.71 0.180889
Target:  5'- aGCGCgaGCCGCCGCGAGaucCGCAaCGaacGCCc -3'
miRNA:   3'- -CGCG--CGGCGGCGCUC---GCGU-GCa--UGGu -5'
12103 5' -61.8 NC_003309.1 + 10256 0.71 0.189975
Target:  5'- gGCGaucCGCCcaGCCGCGAGCGaCACGccgagcuucacgaUGCCGu -3'
miRNA:   3'- -CGC---GCGG--CGGCGCUCGC-GUGC-------------AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 32968 0.71 0.190464
Target:  5'- cGCGCGCUGaggCGCGAGaGCGCGacgACCc -3'
miRNA:   3'- -CGCGCGGCg--GCGCUCgCGUGCa--UGGu -5'
12103 5' -61.8 NC_003309.1 + 22063 0.71 0.195417
Target:  5'- gGCGaagcucacCGCCGCCGCGAGCuGaUAUGUGCg- -3'
miRNA:   3'- -CGC--------GCGGCGGCGCUCG-C-GUGCAUGgu -5'
12103 5' -61.8 NC_003309.1 + 10059 0.7 0.20566
Target:  5'- cCGUGCCGcCCGCc-GCGCGCGUcagcGCCu -3'
miRNA:   3'- cGCGCGGC-GGCGcuCGCGUGCA----UGGu -5'
12103 5' -61.8 NC_003309.1 + 43442 0.7 0.221336
Target:  5'- cGCGCaGCCgcGCCGCGAGauugaacagcaccUGUGCGUGCUg -3'
miRNA:   3'- -CGCG-CGG--CGGCGCUC-------------GCGUGCAUGGu -5'
12103 5' -61.8 NC_003309.1 + 32005 0.7 0.227543
Target:  5'- gGCGCaCCGCgGCGu-CGCACGUcaGCCGc -3'
miRNA:   3'- -CGCGcGGCGgCGCucGCGUGCA--UGGU- -5'
12103 5' -61.8 NC_003309.1 + 32740 0.7 0.227543
Target:  5'- uGCGCGCUGUCGCcuacGAGCuGCGCaUGCUc -3'
miRNA:   3'- -CGCGCGGCGGCG----CUCG-CGUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 27741 0.7 0.227543
Target:  5'- aCGCGCCGCC-CG-GCGCAUc-GCCGa -3'
miRNA:   3'- cGCGCGGCGGcGCuCGCGUGcaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 19392 0.69 0.245223
Target:  5'- aUGC-CCGCCGCGgucAGCGaCACG-ACCGa -3'
miRNA:   3'- cGCGcGGCGGCGC---UCGC-GUGCaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.