miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 2459 0.71 0.180889
Target:  5'- aGCGCgaGCCGCCGCGAGaucCGCAaCGaacGCCc -3'
miRNA:   3'- -CGCG--CGGCGGCGCUC---GCGU-GCa--UGGu -5'
12103 5' -61.8 NC_003309.1 + 3566 0.67 0.350944
Target:  5'- gGCGC-CCGaCCGCGuaGGCG-GCGUAUCGc -3'
miRNA:   3'- -CGCGcGGC-GGCGC--UCGCgUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 3926 0.68 0.270552
Target:  5'- uGCGCGCCGCUGuCGAauuCGC-CGUccuCCAu -3'
miRNA:   3'- -CGCGCGGCGGC-GCUc--GCGuGCAu--GGU- -5'
12103 5' -61.8 NC_003309.1 + 5142 1.1 0.000219
Target:  5'- cGCGCGCCGCCGCGAGCGCACGUACCAu -3'
miRNA:   3'- -CGCGCGGCGGCGCUCGCGUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 5559 0.66 0.400569
Target:  5'- cGCGCGCCGaUCGCGgcggugaGGuCGC-CG-ACCAc -3'
miRNA:   3'- -CGCGCGGC-GGCGC-------UC-GCGuGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 7830 0.66 0.410303
Target:  5'- aCG-GCCGCCagucagcccgGCGAGCGCcaugucgaGCGcGCCAu -3'
miRNA:   3'- cGCgCGGCGG----------CGCUCGCG--------UGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 8810 0.66 0.392715
Target:  5'- uGCGCGUCGUCGCucGCaCGCGUGa-- -3'
miRNA:   3'- -CGCGCGGCGGCGcuCGcGUGCAUggu -5'
12103 5' -61.8 NC_003309.1 + 9185 0.66 0.384105
Target:  5'- cGC-CGCCGCCGCGAucaucGCcGCAUGcagauCCGc -3'
miRNA:   3'- -CGcGCGGCGGCGCU-----CG-CGUGCau---GGU- -5'
12103 5' -61.8 NC_003309.1 + 9258 0.66 0.359041
Target:  5'- --cCGCCGUCGCGGGCuCGCcggACCAu -3'
miRNA:   3'- cgcGCGGCGGCGCUCGcGUGca-UGGU- -5'
12103 5' -61.8 NC_003309.1 + 9528 0.82 0.027298
Target:  5'- uGCGCGCCG-CGuCGAGCGCGCGcACCGu -3'
miRNA:   3'- -CGCGCGGCgGC-GCUCGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 9709 0.66 0.410303
Target:  5'- aGCG-GuuGCCGUGugucGCGCGCGaUGCgCAg -3'
miRNA:   3'- -CGCgCggCGGCGCu---CGCGUGC-AUG-GU- -5'
12103 5' -61.8 NC_003309.1 + 9897 0.66 0.384105
Target:  5'- cGCGCaacugccCCGCCGCGAaCGCuuGU-CCAa -3'
miRNA:   3'- -CGCGc------GGCGGCGCUcGCGugCAuGGU- -5'
12103 5' -61.8 NC_003309.1 + 10059 0.7 0.20566
Target:  5'- cCGUGCCGcCCGCc-GCGCGCGUcagcGCCu -3'
miRNA:   3'- cGCGCGGC-GGCGcuCGCGUGCA----UGGu -5'
12103 5' -61.8 NC_003309.1 + 10256 0.71 0.189975
Target:  5'- gGCGaucCGCCcaGCCGCGAGCGaCACGccgagcuucacgaUGCCGu -3'
miRNA:   3'- -CGC---GCGG--CGGCGCUCGC-GUGC-------------AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 10292 0.66 0.367267
Target:  5'- cUGCGUCGCCGCGAcuGCGgAU-UGCCc -3'
miRNA:   3'- cGCGCGGCGGCGCU--CGCgUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 10471 0.75 0.095241
Target:  5'- cGCGCGCaUGCCGCGAGUucggccuGCGC-UGCCGc -3'
miRNA:   3'- -CGCGCG-GCGGCGCUCG-------CGUGcAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 10595 0.76 0.078863
Target:  5'- cGCGUGCCGUCGCGAcauGCGCuuGcGCCGc -3'
miRNA:   3'- -CGCGCGGCGGCGCU---CGCGugCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 10683 0.66 0.392715
Target:  5'- uGCGCggcgGCCGUcuCGCGGGCGaugaucgcCGCGUACg- -3'
miRNA:   3'- -CGCG----CGGCG--GCGCUCGC--------GUGCAUGgu -5'
12103 5' -61.8 NC_003309.1 + 10743 0.67 0.312428
Target:  5'- -aGCGCCGUccgucgcugcugCGCGAGCGCgaGCGaaGCCu -3'
miRNA:   3'- cgCGCGGCG------------GCGCUCGCG--UGCa-UGGu -5'
12103 5' -61.8 NC_003309.1 + 10879 0.66 0.410303
Target:  5'- cGCGCGuuCCGCuCGCucGCGCgccuGCGUGgCAa -3'
miRNA:   3'- -CGCGC--GGCG-GCGcuCGCG----UGCAUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.