miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12103 5' -61.8 NC_003309.1 + 5142 1.1 0.000219
Target:  5'- cGCGCGCCGCCGCGAGCGCACGUACCAu -3'
miRNA:   3'- -CGCGCGGCGGCGCUCGCGUGCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 9897 0.66 0.384105
Target:  5'- cGCGCaacugccCCGCCGCGAaCGCuuGU-CCAa -3'
miRNA:   3'- -CGCGc------GGCGGCGCUcGCGugCAuGGU- -5'
12103 5' -61.8 NC_003309.1 + 47964 0.66 0.384105
Target:  5'- gGCGCGCCaGCuCGCGcucGGCGaagcuGCG-ACCGa -3'
miRNA:   3'- -CGCGCGG-CG-GCGC---UCGCg----UGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 31411 0.66 0.384105
Target:  5'- aGUGCGCaGCCGCcGGCGUGcCGUuCCu -3'
miRNA:   3'- -CGCGCGgCGGCGcUCGCGU-GCAuGGu -5'
12103 5' -61.8 NC_003309.1 + 19956 0.66 0.375623
Target:  5'- cGCGCGauCCGCUuCGAcGCGCGCG-AUCGc -3'
miRNA:   3'- -CGCGC--GGCGGcGCU-CGCGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 44924 0.66 0.375623
Target:  5'- cGUGCgGCCGCCuCGGGCGUccaGCgGUACa- -3'
miRNA:   3'- -CGCG-CGGCGGcGCUCGCG---UG-CAUGgu -5'
12103 5' -61.8 NC_003309.1 + 10292 0.66 0.367267
Target:  5'- cUGCGUCGCCGCGAcuGCGgAU-UGCCc -3'
miRNA:   3'- cGCGCGGCGGCGCU--CGCgUGcAUGGu -5'
12103 5' -61.8 NC_003309.1 + 45257 0.66 0.366439
Target:  5'- aUGCcgGCCGCCGCGuGCGCcucgaauacgucgGCGgcacuCCAg -3'
miRNA:   3'- cGCG--CGGCGGCGCuCGCG-------------UGCau---GGU- -5'
12103 5' -61.8 NC_003309.1 + 9258 0.66 0.359041
Target:  5'- --cCGCCGUCGCGGGCuCGCcggACCAu -3'
miRNA:   3'- cgcGCGGCGGCGCUCGcGUGca-UGGU- -5'
12103 5' -61.8 NC_003309.1 + 9185 0.66 0.384105
Target:  5'- cGC-CGCCGCCGCGAucaucGCcGCAUGcagauCCGc -3'
miRNA:   3'- -CGcGCGGCGGCGCU-----CG-CGUGCau---GGU- -5'
12103 5' -61.8 NC_003309.1 + 10683 0.66 0.392715
Target:  5'- uGCGCggcgGCCGUcuCGCGGGCGaugaucgcCGCGUACg- -3'
miRNA:   3'- -CGCG----CGGCG--GCGCUCGC--------GUGCAUGgu -5'
12103 5' -61.8 NC_003309.1 + 8810 0.66 0.392715
Target:  5'- uGCGCGUCGUCGCucGCaCGCGUGa-- -3'
miRNA:   3'- -CGCGCGGCGGCGcuCGcGUGCAUggu -5'
12103 5' -61.8 NC_003309.1 + 10879 0.66 0.410303
Target:  5'- cGCGCGuuCCGCuCGCucGCGCgccuGCGUGgCAa -3'
miRNA:   3'- -CGCGC--GGCG-GCGcuCGCG----UGCAUgGU- -5'
12103 5' -61.8 NC_003309.1 + 9709 0.66 0.410303
Target:  5'- aGCG-GuuGCCGUGugucGCGCGCGaUGCgCAg -3'
miRNA:   3'- -CGCgCggCGGCGCu---CGCGUGC-AUG-GU- -5'
12103 5' -61.8 NC_003309.1 + 34871 0.66 0.410303
Target:  5'- -aGCGCCGCCaacGUGAacgaGCACGUcaucACCGa -3'
miRNA:   3'- cgCGCGGCGG---CGCUcg--CGUGCA----UGGU- -5'
12103 5' -61.8 NC_003309.1 + 27180 0.66 0.401448
Target:  5'- cGCGCGuguuguagaCCGgCGCGccGGCGUugacCGUGCCGc -3'
miRNA:   3'- -CGCGC---------GGCgGCGC--UCGCGu---GCAUGGU- -5'
12103 5' -61.8 NC_003309.1 + 16751 0.66 0.401448
Target:  5'- cGCGCGCCGaCGUcagGAaCGCGCGgaaGCCc -3'
miRNA:   3'- -CGCGCGGCgGCG---CUcGCGUGCa--UGGu -5'
12103 5' -61.8 NC_003309.1 + 22459 0.66 0.401448
Target:  5'- uCGUG-CGCgGCGAuCGCACGcUGCCGg -3'
miRNA:   3'- cGCGCgGCGgCGCUcGCGUGC-AUGGU- -5'
12103 5' -61.8 NC_003309.1 + 22317 0.66 0.401448
Target:  5'- -aGCGCCgGCCGCcaugccaAGCaGCGCG-GCCAa -3'
miRNA:   3'- cgCGCGG-CGGCGc------UCG-CGUGCaUGGU- -5'
12103 5' -61.8 NC_003309.1 + 5559 0.66 0.400569
Target:  5'- cGCGCGCCGaUCGCGgcggugaGGuCGC-CG-ACCAc -3'
miRNA:   3'- -CGCGCGGC-GGCGC-------UC-GCGuGCaUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.