miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12104 5' -55 NC_003309.1 + 5540 1.08 0.001294
Target:  5'- uGAGGUCGCCGACCACGAUCUGAUCGAc -3'
miRNA:   3'- -CUCCAGCGGCUGGUGCUAGACUAGCU- -5'
12104 5' -55 NC_003309.1 + 48016 0.75 0.243315
Target:  5'- cGAGGUCGCCGGauGCGAUUUcGUCGAa -3'
miRNA:   3'- -CUCCAGCGGCUggUGCUAGAcUAGCU- -5'
12104 5' -55 NC_003309.1 + 49095 0.74 0.321014
Target:  5'- -cGGcgUGCCGACC-CGGUuCUGAUCGAu -3'
miRNA:   3'- cuCCa-GCGGCUGGuGCUA-GACUAGCU- -5'
12104 5' -55 NC_003309.1 + 8708 0.72 0.374147
Target:  5'- -cGGUCGCCGACCgucggcucgcgcacuGCGAUCUuuUCGc -3'
miRNA:   3'- cuCCAGCGGCUGG---------------UGCUAGAcuAGCu -5'
12104 5' -55 NC_003309.1 + 19768 0.71 0.434855
Target:  5'- --cGUCGCCGGCCAUcggcgggguGAUCaGGUCGAu -3'
miRNA:   3'- cucCAGCGGCUGGUG---------CUAGaCUAGCU- -5'
12104 5' -55 NC_003309.1 + 11154 0.69 0.536587
Target:  5'- --aGUUGCCGAUauuugucgAUGAUCUGAUCGAg -3'
miRNA:   3'- cucCAGCGGCUGg-------UGCUAGACUAGCU- -5'
12104 5' -55 NC_003309.1 + 44863 0.67 0.667257
Target:  5'- cAGGuUCGCCGGCgGCGAUCcGcgCa- -3'
miRNA:   3'- cUCC-AGCGGCUGgUGCUAGaCuaGcu -5'
12104 5' -55 NC_003309.1 + 12843 0.67 0.689033
Target:  5'- cGAGGUCGgCGAUCAUG--CUG-UCGAu -3'
miRNA:   3'- -CUCCAGCgGCUGGUGCuaGACuAGCU- -5'
12104 5' -55 NC_003309.1 + 48216 0.66 0.710591
Target:  5'- cGAGcGcCGCUGACgCGCGAUCaGcUCGAa -3'
miRNA:   3'- -CUC-CaGCGGCUG-GUGCUAGaCuAGCU- -5'
12104 5' -55 NC_003309.1 + 26844 0.66 0.72126
Target:  5'- cGGGGUCGCCGACaucgagccccggCAUaAUUUGcgCGAu -3'
miRNA:   3'- -CUCCAGCGGCUG------------GUGcUAGACuaGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.