miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12105 3' -54.9 NC_003309.1 + 3355 0.66 0.738734
Target:  5'- uCGUUCACcaugUGAgcCGGGaucuuguagauCCGCGCGAu -3'
miRNA:   3'- -GCGAGUGuuuaACU--GCCC-----------GGCGCGCU- -5'
12105 3' -54.9 NC_003309.1 + 27949 0.73 0.316465
Target:  5'- uGCaUCGCAGAUgcgucgcGGCGGGCaCGCGCa- -3'
miRNA:   3'- gCG-AGUGUUUAa------CUGCCCG-GCGCGcu -5'
12105 3' -54.9 NC_003309.1 + 4872 0.73 0.332367
Target:  5'- gCGCUUGCAcccgcuGAUUGAC-GGCUGCGCGu -3'
miRNA:   3'- -GCGAGUGU------UUAACUGcCCGGCGCGCu -5'
12105 3' -54.9 NC_003309.1 + 46671 0.71 0.429973
Target:  5'- gCGCUCAgG---UGAcCGGGCCgGCGCGu -3'
miRNA:   3'- -GCGAGUgUuuaACU-GCCCGG-CGCGCu -5'
12105 3' -54.9 NC_003309.1 + 12496 0.71 0.429973
Target:  5'- uCGCUCACGcGAUUGAUGGccugauucaGCuCGCGCGc -3'
miRNA:   3'- -GCGAGUGU-UUAACUGCC---------CG-GCGCGCu -5'
12105 3' -54.9 NC_003309.1 + 22252 0.69 0.531788
Target:  5'- cCGCUCACAAAUUGcGCGuucaGuaGCGCGGc -3'
miRNA:   3'- -GCGAGUGUUUAAC-UGCc---CggCGCGCU- -5'
12105 3' -54.9 NC_003309.1 + 42668 0.68 0.618936
Target:  5'- uGCUCaACAGcga-ACGGGCCG-GCGAu -3'
miRNA:   3'- gCGAG-UGUUuaacUGCCCGGCgCGCU- -5'
12105 3' -54.9 NC_003309.1 + 52733 0.67 0.663064
Target:  5'- aCGCgaaaAAGUUGGCGGGCCaGCcCGGc -3'
miRNA:   3'- -GCGagugUUUAACUGCCCGG-CGcGCU- -5'
12105 3' -54.9 NC_003309.1 + 21909 0.67 0.68936
Target:  5'- uCGCcgUUGCAugccgUGACGaugccgauuggaucuGGCCGCGCGAc -3'
miRNA:   3'- -GCG--AGUGUuua--ACUGC---------------CCGGCGCGCU- -5'
12105 3' -54.9 NC_003309.1 + 44198 0.67 0.69589
Target:  5'- aGCUUuCGGAUUGACGcccGCgGCGCGc -3'
miRNA:   3'- gCGAGuGUUUAACUGCc--CGgCGCGCu -5'
12105 3' -54.9 NC_003309.1 + 6160 1.09 0.00106
Target:  5'- cCGCUCACAAAUUGACGGGCCGCGCGAu -3'
miRNA:   3'- -GCGAGUGUUUAACUGCCCGGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.