miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12107 3' -55.3 NC_003309.1 + 35094 0.66 0.710386
Target:  5'- cGAGCuCGCuGUCGGcGAUGuuGUGUUCUa -3'
miRNA:   3'- -CUUG-GCG-CGGCCuCUACugUACGAGG- -5'
12107 3' -55.3 NC_003309.1 + 11054 0.66 0.688733
Target:  5'- cGGCCGCGCCG-AGugcGAcCGUGC-CCa -3'
miRNA:   3'- cUUGGCGCGGCcUCua-CU-GUACGaGG- -5'
12107 3' -55.3 NC_003309.1 + 50196 0.66 0.688733
Target:  5'- cGAGCgCGagguucgaaaUGCCGGGGAacGACG-GCUCCa -3'
miRNA:   3'- -CUUG-GC----------GCGGCCUCUa-CUGUaCGAGG- -5'
12107 3' -55.3 NC_003309.1 + 1196 0.67 0.655871
Target:  5'- -cGCCGuCGCCuGGGuugccGAUGAUcgGCUCa -3'
miRNA:   3'- cuUGGC-GCGG-CCU-----CUACUGuaCGAGg -5'
12107 3' -55.3 NC_003309.1 + 22054 0.69 0.546371
Target:  5'- -cACCGcCGCCGcGAGcUGAUAUGUgcgCCc -3'
miRNA:   3'- cuUGGC-GCGGC-CUCuACUGUACGa--GG- -5'
12107 3' -55.3 NC_003309.1 + 43438 0.7 0.443316
Target:  5'- cAGCCGCGCCGcGAGAuugaacagcaccUGuGCGUGCUg- -3'
miRNA:   3'- cUUGGCGCGGC-CUCU------------AC-UGUACGAgg -5'
12107 3' -55.3 NC_003309.1 + 13052 0.73 0.334741
Target:  5'- aAGCUGCGCCGG-GAUacugucgcucgugGACGUGC-CCg -3'
miRNA:   3'- cUUGGCGCGGCCuCUA-------------CUGUACGaGG- -5'
12107 3' -55.3 NC_003309.1 + 7101 1.12 0.000612
Target:  5'- cGAACCGCGCCGGAGAUGACAUGCUCCu -3'
miRNA:   3'- -CUUGGCGCGGCCUCUACUGUACGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.