miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12108 3' -53.5 NC_003309.1 + 164 0.67 0.750826
Target:  5'- cGCGAUuuuccGCGCCGuCGGCUUggguuuucugcCCCGGc -3'
miRNA:   3'- -UGCUAuaa--CGCGGC-GUUGAA-----------GGGCCa -5'
12108 3' -53.5 NC_003309.1 + 474 0.66 0.78089
Target:  5'- -----uUUGCGCCGCcGCUUCCuucacaaCGGUc -3'
miRNA:   3'- ugcuauAACGCGGCGuUGAAGG-------GCCA- -5'
12108 3' -53.5 NC_003309.1 + 7433 1.07 0.001964
Target:  5'- gACGAUAUUGCGCCGCAACUUCCCGGUc -3'
miRNA:   3'- -UGCUAUAACGCGGCGUUGAAGGGCCA- -5'
12108 3' -53.5 NC_003309.1 + 7773 0.69 0.629674
Target:  5'- gACGAaaUAcgGCGCCgGCGcCUUCgCCGGUg -3'
miRNA:   3'- -UGCU--AUaaCGCGG-CGUuGAAG-GGCCA- -5'
12108 3' -53.5 NC_003309.1 + 13800 0.72 0.417009
Target:  5'- cGCGGuUGUUGuCGCCGCcGCUUCcgCCGGg -3'
miRNA:   3'- -UGCU-AUAAC-GCGGCGuUGAAG--GGCCa -5'
12108 3' -53.5 NC_003309.1 + 23985 0.68 0.640899
Target:  5'- cACGAgcggaacGCGCCGCGACga-UCGGUg -3'
miRNA:   3'- -UGCUauaa---CGCGGCGUUGaagGGCCA- -5'
12108 3' -53.5 NC_003309.1 + 26474 0.67 0.718618
Target:  5'- cGCGAacgGcUGCGCCGC--CUUCCCGu- -3'
miRNA:   3'- -UGCUa--UaACGCGGCGuuGAAGGGCca -5'
12108 3' -53.5 NC_003309.1 + 28839 0.67 0.750826
Target:  5'- cACGGUGcugGCGCUGCAACcaugucgCCCGcGg -3'
miRNA:   3'- -UGCUAUaa-CGCGGCGUUGaa-----GGGC-Ca -5'
12108 3' -53.5 NC_003309.1 + 44561 0.68 0.696679
Target:  5'- gACGAUc--GCGCUGCAGCggcucauagUCCgGGUu -3'
miRNA:   3'- -UGCUAuaaCGCGGCGUUGa--------AGGgCCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.