miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12108 5' -56 NC_003309.1 + 5559 0.66 0.64419
Target:  5'- -cGCGCGCCga-UCGCGGcggugagGUCGCCg- -3'
miRNA:   3'- aaUGCGCGGagcAGUGCC-------UAGUGGaa -5'
12108 5' -56 NC_003309.1 + 45948 0.66 0.634147
Target:  5'- -gACGCGCUUCG----GGAUCGCCg- -3'
miRNA:   3'- aaUGCGCGGAGCagugCCUAGUGGaa -5'
12108 5' -56 NC_003309.1 + 9529 0.68 0.471595
Target:  5'- cUGCGCGCCgCGUCgaGCGcGcgCACCg- -3'
miRNA:   3'- aAUGCGCGGaGCAG--UGC-CuaGUGGaa -5'
12108 5' -56 NC_003309.1 + 19021 0.69 0.451373
Target:  5'- cUGCGCGCCgUCGUC---GAUCGCCg- -3'
miRNA:   3'- aAUGCGCGG-AGCAGugcCUAGUGGaa -5'
12108 5' -56 NC_003309.1 + 39599 0.69 0.440455
Target:  5'- gUGCuGCGCUUCGUgACGGAUucaagaucgaaucCGCCUg -3'
miRNA:   3'- aAUG-CGCGGAGCAgUGCCUA-------------GUGGAa -5'
12108 5' -56 NC_003309.1 + 6549 0.71 0.349482
Target:  5'- -aGCGCGCCUUGcguaUCGCGGcgCcaGCCUUg -3'
miRNA:   3'- aaUGCGCGGAGC----AGUGCCuaG--UGGAA- -5'
12108 5' -56 NC_003309.1 + 47858 0.77 0.146143
Target:  5'- -aGCGCGCUUCGUCACG--UCGCCUc -3'
miRNA:   3'- aaUGCGCGGAGCAGUGCcuAGUGGAa -5'
12108 5' -56 NC_003309.1 + 7391 1.02 0.00206
Target:  5'- cUUACGCGCCUCGUCACGGAUCACCUUc -3'
miRNA:   3'- -AAUGCGCGGAGCAGUGCCUAGUGGAA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.