Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12110 | 5' | -56.6 | NC_003309.1 | + | 53060 | 0.71 | 0.371149 |
Target: 5'- aUCCucGCGCAUGA-CGAUUGCcGCGCa -3' miRNA: 3'- -AGGcuCGUGUGCUaGCUAGCG-CGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 53008 | 0.7 | 0.424993 |
Target: 5'- cUCGuGCGCAUG-UUGAUCGCaGUGCGa -3' miRNA: 3'- aGGCuCGUGUGCuAGCUAGCG-CGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 52698 | 0.74 | 0.251557 |
Target: 5'- cUCCGAGUugGCGAUUGG-CGUGUGUu -3' miRNA: 3'- -AGGCUCGugUGCUAGCUaGCGCGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 50273 | 0.69 | 0.463372 |
Target: 5'- gCCGAaacuGCGCucgaGAUCGcgaaagcugaucGUCGCGCGCGc -3' miRNA: 3'- aGGCU----CGUGug--CUAGC------------UAGCGCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 49854 | 0.68 | 0.545042 |
Target: 5'- uUCgGAGCACGu--UCu-UCGCGCGCGg -3' miRNA: 3'- -AGgCUCGUGUgcuAGcuAGCGCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 49468 | 0.73 | 0.292259 |
Target: 5'- gCCGAGCACGCGcgaaugcCGAUUGCGaUGCa -3' miRNA: 3'- aGGCUCGUGUGCua-----GCUAGCGC-GCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 48699 | 0.7 | 0.415697 |
Target: 5'- gCCGcGUGCGCGAUCGcugCGCuGCGCu -3' miRNA: 3'- aGGCuCGUGUGCUAGCua-GCG-CGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 47024 | 0.66 | 0.663228 |
Target: 5'- aCUGcacuGCACGCGG-CGAUUG-GCGCGu -3' miRNA: 3'- aGGCu---CGUGUGCUaGCUAGCgCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 46311 | 0.7 | 0.424993 |
Target: 5'- gCCGAGCACggccuucuGCGcacgCGAgCGCGCGUGc -3' miRNA: 3'- aGGCUCGUG--------UGCua--GCUaGCGCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 46119 | 0.66 | 0.663228 |
Target: 5'- --aGAGCGCACGGUCGGcaccUCGacaccgaaCGCGaCGg -3' miRNA: 3'- aggCUCGUGUGCUAGCU----AGC--------GCGC-GC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 44775 | 0.75 | 0.227098 |
Target: 5'- aCCGAGCGCGCGAggcaaauagUCGA--GCGCGUa -3' miRNA: 3'- aGGCUCGUGUGCU---------AGCUagCGCGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 43543 | 0.7 | 0.406527 |
Target: 5'- gUCUGcacGCGCACGccGUCGGcggccaUCGCGCGCa -3' miRNA: 3'- -AGGCu--CGUGUGC--UAGCU------AGCGCGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 43209 | 0.7 | 0.41018 |
Target: 5'- cUUCGAGCAUcCGAUCGucguuggucacguccGUCGCGCGa- -3' miRNA: 3'- -AGGCUCGUGuGCUAGC---------------UAGCGCGCgc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 37329 | 0.74 | 0.251557 |
Target: 5'- aUCaCGGGCGucuaccUGCGcgCGAUCGUGCGCGa -3' miRNA: 3'- -AG-GCUCGU------GUGCuaGCUAGCGCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 36237 | 0.66 | 0.684716 |
Target: 5'- -aCGAGCACucCGAUCGccaguAUCGCcCGUGc -3' miRNA: 3'- agGCUCGUGu-GCUAGC-----UAGCGcGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 35042 | 0.66 | 0.637301 |
Target: 5'- aCCGAGCGCcugugcgacgccgACGAcgugaucgauaugaUCGGUgaGCGCGCc -3' miRNA: 3'- aGGCUCGUG-------------UGCU--------------AGCUAg-CGCGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 33049 | 0.68 | 0.545042 |
Target: 5'- -gCGAcucGCGCACGAUCGA-CGaccugaucaacCGCGCGa -3' miRNA: 3'- agGCU---CGUGUGCUAGCUaGC-----------GCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 29608 | 0.69 | 0.453604 |
Target: 5'- cCCGAGCAaaACGGUgGAUUcgagcgGCGUGCGg -3' miRNA: 3'- aGGCUCGUg-UGCUAgCUAG------CGCGCGC- -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 24104 | 0.67 | 0.609187 |
Target: 5'- gCCGGGaUACACGccgauAUCGGcacCGCGCGCc -3' miRNA: 3'- aGGCUC-GUGUGC-----UAGCUa--GCGCGCGc -5' |
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12110 | 5' | -56.6 | NC_003309.1 | + | 22460 | 0.66 | 0.684716 |
Target: 5'- aUCGuGCGCgGCGAUCGcacgcugccggcGUCGaGCGCGg -3' miRNA: 3'- aGGCuCGUG-UGCUAGC------------UAGCgCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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