miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12110 5' -56.6 NC_003309.1 + 6769 0.67 0.587641
Target:  5'- gCCuGGUACuuGAUCGucacggCGCGCGCa -3'
miRNA:   3'- aGGcUCGUGugCUAGCua----GCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 17315 0.68 0.555611
Target:  5'- gCCGAGauCAC-AUCGAgcaccuUCGCGCGCGc -3'
miRNA:   3'- aGGCUCguGUGcUAGCU------AGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 33049 0.68 0.545042
Target:  5'- -gCGAcucGCGCACGAUCGA-CGaccugaucaacCGCGCGa -3'
miRNA:   3'- agGCU---CGUGUGCUAGCUaGC-----------GCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 49854 0.68 0.545042
Target:  5'- uUCgGAGCACGu--UCu-UCGCGCGCGg -3'
miRNA:   3'- -AGgCUCGUGUgcuAGcuAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 6103 0.68 0.545042
Target:  5'- gCCGgccAGCACAgCGAUCGAcucgaCGUGaCGCGg -3'
miRNA:   3'- aGGC---UCGUGU-GCUAGCUa----GCGC-GCGC- -5'
12110 5' -56.6 NC_003309.1 + 16149 0.69 0.483231
Target:  5'- gCCGAGCgACACGAUCacccacuUCGCGaUGCc -3'
miRNA:   3'- aGGCUCG-UGUGCUAGcu-----AGCGC-GCGc -5'
12110 5' -56.6 NC_003309.1 + 9535 0.69 0.483231
Target:  5'- aUCGAacuGCGCGCcgcGUCGAgCGCGCGCa -3'
miRNA:   3'- aGGCU---CGUGUGc--UAGCUaGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 50273 0.69 0.463372
Target:  5'- gCCGAaacuGCGCucgaGAUCGcgaaagcugaucGUCGCGCGCGc -3'
miRNA:   3'- aGGCU----CGUGug--CUAGC------------UAGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 29608 0.69 0.453604
Target:  5'- cCCGAGCAaaACGGUgGAUUcgagcgGCGUGCGg -3'
miRNA:   3'- aGGCUCGUg-UGCUAgCUAG------CGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 10974 0.7 0.443949
Target:  5'- aCCGAGCGCAUcAUCGugccCGUacGCGCGa -3'
miRNA:   3'- aGGCUCGUGUGcUAGCua--GCG--CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 11241 0.7 0.434411
Target:  5'- cUCCG-GUACGCGGacugcgcgUCGucugcCGCGCGCGa -3'
miRNA:   3'- -AGGCuCGUGUGCU--------AGCua---GCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 46311 0.7 0.424993
Target:  5'- gCCGAGCACggccuucuGCGcacgCGAgCGCGCGUGc -3'
miRNA:   3'- aGGCUCGUG--------UGCua--GCUaGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 53008 0.7 0.424993
Target:  5'- cUCGuGCGCAUG-UUGAUCGCaGUGCGa -3'
miRNA:   3'- aGGCuCGUGUGCuAGCUAGCG-CGCGC- -5'
12110 5' -56.6 NC_003309.1 + 48699 0.7 0.415697
Target:  5'- gCCGcGUGCGCGAUCGcugCGCuGCGCu -3'
miRNA:   3'- aGGCuCGUGUGCUAGCua-GCG-CGCGc -5'
12110 5' -56.6 NC_003309.1 + 43209 0.7 0.41018
Target:  5'- cUUCGAGCAUcCGAUCGucguuggucacguccGUCGCGCGa- -3'
miRNA:   3'- -AGGCUCGUGuGCUAGC---------------UAGCGCGCgc -5'
12110 5' -56.6 NC_003309.1 + 43543 0.7 0.406527
Target:  5'- gUCUGcacGCGCACGccGUCGGcggccaUCGCGCGCa -3'
miRNA:   3'- -AGGCu--CGUGUGC--UAGCU------AGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 10500 0.7 0.406527
Target:  5'- gCCGAcuGCAuCGCGAggcuuucgCGcAUCGCGCGCa -3'
miRNA:   3'- aGGCU--CGU-GUGCUa-------GC-UAGCGCGCGc -5'
12110 5' -56.6 NC_003309.1 + 19300 0.71 0.379794
Target:  5'- gCCGAGCGCGuuuuCGGcgCGcaCGCGCGCGa -3'
miRNA:   3'- aGGCUCGUGU----GCUa-GCuaGCGCGCGC- -5'
12110 5' -56.6 NC_003309.1 + 53060 0.71 0.371149
Target:  5'- aUCCucGCGCAUGA-CGAUUGCcGCGCa -3'
miRNA:   3'- -AGGcuCGUGUGCUaGCUAGCG-CGCGc -5'
12110 5' -56.6 NC_003309.1 + 19961 0.72 0.314467
Target:  5'- gCCu-GCGCGCGAuccgcuUCGA-CGCGCGCGa -3'
miRNA:   3'- aGGcuCGUGUGCU------AGCUaGCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.