Results 1 - 20 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 30876 | 0.66 | 0.777231 |
Target: 5'- gCGAuCGAACcuagucgcaauccgaACgAGAUCaacgGCCGUGUCa -3' miRNA: 3'- aGCU-GCUUG---------------UGgUCUAGa---CGGCGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 33965 | 0.66 | 0.773191 |
Target: 5'- aCGACGAuUACC-GAUgUGaCCGCGcCg -3' miRNA: 3'- aGCUGCUuGUGGuCUAgAC-GGCGCaG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 13162 | 0.66 | 0.773191 |
Target: 5'- gCGGCGAAUcgcgcgaaGCCGGAUC-GCCccccuGCGUUc -3' miRNA: 3'- aGCUGCUUG--------UGGUCUAGaCGG-----CGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 32387 | 0.66 | 0.76299 |
Target: 5'- gCGACGGcucGCugCGGcg--GCCGUGUCc -3' miRNA: 3'- aGCUGCU---UGugGUCuagaCGGCGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 966 | 0.66 | 0.752654 |
Target: 5'- gCGGCGGuCACC-GAUUUGCCGUu-- -3' miRNA: 3'- aGCUGCUuGUGGuCUAGACGGCGcag -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 22453 | 0.66 | 0.752654 |
Target: 5'- gCGGCGAuCGCacg--CUGCCGgCGUCg -3' miRNA: 3'- aGCUGCUuGUGgucuaGACGGC-GCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 5160 | 0.66 | 0.742192 |
Target: 5'- -aGGCGAGCugCGcGUC-GCCGCG-Cg -3' miRNA: 3'- agCUGCUUGugGUcUAGaCGGCGCaG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 20024 | 0.66 | 0.742192 |
Target: 5'- gCGACGGuuuGCACCg---CcGCCGCGUUg -3' miRNA: 3'- aGCUGCU---UGUGGucuaGaCGGCGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 14868 | 0.66 | 0.731618 |
Target: 5'- gCGAUG-ACGCCAGc-CUGCCGCc-- -3' miRNA: 3'- aGCUGCuUGUGGUCuaGACGGCGcag -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 15329 | 0.67 | 0.720944 |
Target: 5'- gUCGGCGAugGCUg---CUGC-GCGUCg -3' miRNA: 3'- -AGCUGCUugUGGucuaGACGgCGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 11904 | 0.67 | 0.716648 |
Target: 5'- cUCGGCGAGCGCCuccgcaaccaccAUCUGCUGauUCa -3' miRNA: 3'- -AGCUGCUUGUGGuc----------UAGACGGCgcAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 43526 | 0.67 | 0.71018 |
Target: 5'- gUCGGCGGccaucgcgcGCAUCAGGUC-GCgGCaGUCu -3' miRNA: 3'- -AGCUGCU---------UGUGGUCUAGaCGgCG-CAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 11234 | 0.67 | 0.699338 |
Target: 5'- aCG-CGGACugCGcgucGUCUGCCGCG-Cg -3' miRNA: 3'- aGCuGCUUGugGUc---UAGACGGCGCaG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 19038 | 0.68 | 0.666463 |
Target: 5'- aUCGGCcGuuGCUGGAUCUGCgCGcCGUCg -3' miRNA: 3'- -AGCUGcUugUGGUCUAGACG-GC-GCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 48725 | 0.68 | 0.666463 |
Target: 5'- --aGCGAAuCAUCAGGUCgacugccaaUGCCGCGUg -3' miRNA: 3'- agcUGCUU-GUGGUCUAG---------ACGGCGCAg -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 46365 | 0.68 | 0.655425 |
Target: 5'- cUCcGCGAGCGCCGccucGAUCUGCuuaCGCGg- -3' miRNA: 3'- -AGcUGCUUGUGGU----CUAGACG---GCGCag -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 19484 | 0.69 | 0.589094 |
Target: 5'- uUCGGCGuGCggcuguACCAGAUCUccguucGCUGCGUg -3' miRNA: 3'- -AGCUGCuUG------UGGUCUAGA------CGGCGCAg -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 32809 | 0.69 | 0.589094 |
Target: 5'- aCGACGAGuCGCUGGAgauggCUGCUgauGCGUUg -3' miRNA: 3'- aGCUGCUU-GUGGUCUa----GACGG---CGCAG- -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 52577 | 0.69 | 0.589094 |
Target: 5'- -gGACGGcCACCGGGccUUUGCCGUGg- -3' miRNA: 3'- agCUGCUuGUGGUCU--AGACGGCGCag -5' |
|||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 10334 | 0.69 | 0.571546 |
Target: 5'- cUCGACGAGCgcucGCCGGGcgccgacccacgcugUCgccGCCuGCGUCg -3' miRNA: 3'- -AGCUGCUUG----UGGUCU---------------AGa--CGG-CGCAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home