Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12112 | 5' | -54.4 | NC_003309.1 | + | 8188 | 1.11 | 0.000875 |
Target: 5'- aUCGACGAACACCAGAUCUGCCGCGUCg -3' miRNA: 3'- -AGCUGCUUGUGGUCUAGACGGCGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 24435 | 0.75 | 0.257869 |
Target: 5'- gCGGCGGAUAUCGGcgCUcaugagcaaaacccGCCGCGUCg -3' miRNA: 3'- aGCUGCUUGUGGUCuaGA--------------CGGCGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 11383 | 0.73 | 0.36787 |
Target: 5'- gUCGACGc---CCAGGUCUGCCGCc-- -3' miRNA: 3'- -AGCUGCuuguGGUCUAGACGGCGcag -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 16046 | 0.72 | 0.422733 |
Target: 5'- gCGACGAucuCGCCAGcAUCUuCCGCGg- -3' miRNA: 3'- aGCUGCUu--GUGGUC-UAGAcGGCGCag -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 7814 | 0.71 | 0.472018 |
Target: 5'- cCGGCGAGCGCCAuGUCgaGCgcgccauguacgCGCGUCa -3' miRNA: 3'- aGCUGCUUGUGGUcUAGa-CG------------GCGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 23617 | 0.7 | 0.545474 |
Target: 5'- cCGGCGAacacGCGCCGGAUCU-CCGgaugGUCg -3' miRNA: 3'- aGCUGCU----UGUGGUCUAGAcGGCg---CAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 10334 | 0.69 | 0.571546 |
Target: 5'- cUCGACGAGCgcucGCCGGGcgccgacccacgcugUCgccGCCuGCGUCg -3' miRNA: 3'- -AGCUGCUUG----UGGUCU---------------AGa--CGG-CGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 52577 | 0.69 | 0.589094 |
Target: 5'- -gGACGGcCACCGGGccUUUGCCGUGg- -3' miRNA: 3'- agCUGCUuGUGGUCU--AGACGGCGCag -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 32809 | 0.69 | 0.589094 |
Target: 5'- aCGACGAGuCGCUGGAgauggCUGCUgauGCGUUg -3' miRNA: 3'- aGCUGCUU-GUGGUCUa----GACGG---CGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 19484 | 0.69 | 0.589094 |
Target: 5'- uUCGGCGuGCggcuguACCAGAUCUccguucGCUGCGUg -3' miRNA: 3'- -AGCUGCuUG------UGGUCUAGA------CGGCGCAg -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 19038 | 0.68 | 0.666463 |
Target: 5'- aUCGGCcGuuGCUGGAUCUGCgCGcCGUCg -3' miRNA: 3'- -AGCUGcUugUGGUCUAGACG-GC-GCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 46365 | 0.68 | 0.655425 |
Target: 5'- cUCcGCGAGCGCCGccucGAUCUGCuuaCGCGg- -3' miRNA: 3'- -AGcUGCUUGUGGU----CUAGACG---GCGCag -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 48725 | 0.68 | 0.666463 |
Target: 5'- --aGCGAAuCAUCAGGUCgacugccaaUGCCGCGUg -3' miRNA: 3'- agcUGCUU-GUGGUCUAG---------ACGGCGCAg -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 11904 | 0.67 | 0.716648 |
Target: 5'- cUCGGCGAGCGCCuccgcaaccaccAUCUGCUGauUCa -3' miRNA: 3'- -AGCUGCUUGUGGuc----------UAGACGGCgcAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 11234 | 0.67 | 0.699338 |
Target: 5'- aCG-CGGACugCGcgucGUCUGCCGCG-Cg -3' miRNA: 3'- aGCuGCUUGugGUc---UAGACGGCGCaG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 43526 | 0.67 | 0.71018 |
Target: 5'- gUCGGCGGccaucgcgcGCAUCAGGUC-GCgGCaGUCu -3' miRNA: 3'- -AGCUGCU---------UGUGGUCUAGaCGgCG-CAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 15329 | 0.67 | 0.720944 |
Target: 5'- gUCGGCGAugGCUg---CUGC-GCGUCg -3' miRNA: 3'- -AGCUGCUugUGGucuaGACGgCGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 13162 | 0.66 | 0.773191 |
Target: 5'- gCGGCGAAUcgcgcgaaGCCGGAUC-GCCccccuGCGUUc -3' miRNA: 3'- aGCUGCUUG--------UGGUCUAGaCGG-----CGCAG- -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 966 | 0.66 | 0.752654 |
Target: 5'- gCGGCGGuCACC-GAUUUGCCGUu-- -3' miRNA: 3'- aGCUGCUuGUGGuCUAGACGGCGcag -5' |
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12112 | 5' | -54.4 | NC_003309.1 | + | 22453 | 0.66 | 0.752654 |
Target: 5'- gCGGCGAuCGCacg--CUGCCGgCGUCg -3' miRNA: 3'- aGCUGCUuGUGgucuaGACGGC-GCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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