Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12114 | 3' | -54.9 | NC_003309.1 | + | 46419 | 0.66 | 0.762945 |
Target: 5'- -cCGCGUCGUCaauaCCGAGcacccaucGCAGCCc -3' miRNA: 3'- caGCGUAGCAGca--GGCUCu-------UGUCGGc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 11770 | 0.66 | 0.742324 |
Target: 5'- -aCGCGUCGgcgCGcCCGGcGAuCAGCCc -3' miRNA: 3'- caGCGUAGCa--GCaGGCU-CUuGUCGGc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 6409 | 0.67 | 0.695527 |
Target: 5'- -cCGCGUCGUCcagauauucgaCGAGAACAGCa- -3' miRNA: 3'- caGCGUAGCAGcag--------GCUCUUGUCGgc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 1013 | 0.67 | 0.689033 |
Target: 5'- -cCGCAccgaacUCGUCGU-CGAGGACGaacauGCCGa -3' miRNA: 3'- caGCGU------AGCAGCAgGCUCUUGU-----CGGC- -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 11095 | 0.67 | 0.667257 |
Target: 5'- cGUCGCAcugcucgCGUUGUCgCG-GAACAGCa- -3' miRNA: 3'- -CAGCGUa------GCAGCAG-GCuCUUGUCGgc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 8168 | 0.68 | 0.64535 |
Target: 5'- -cCGCGUCGagGUCCGuuGAC-GCCa -3' miRNA: 3'- caGCGUAGCagCAGGCucUUGuCGGc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 11592 | 0.68 | 0.64535 |
Target: 5'- aUUGU-UCG-CGUCCGAcAGCAGCCGc -3' miRNA: 3'- cAGCGuAGCaGCAGGCUcUUGUCGGC- -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 19499 | 0.68 | 0.601469 |
Target: 5'- aUCGCGUCGUCGcgaUUCGGcguGCGGCUGu -3' miRNA: 3'- cAGCGUAGCAGC---AGGCUcu-UGUCGGC- -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 8495 | 0.69 | 0.579648 |
Target: 5'- -aCGCuguaCGUCG-CCGAGAuCAGCCc -3' miRNA: 3'- caGCGua--GCAGCaGGCUCUuGUCGGc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 31060 | 0.69 | 0.579648 |
Target: 5'- uUCGCGccUCGUCGcCCGGGGgaaauucuGgAGCCGu -3' miRNA: 3'- cAGCGU--AGCAGCaGGCUCU--------UgUCGGC- -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 47598 | 0.77 | 0.202475 |
Target: 5'- cGUCGCcgCGcCGUCCGgcuuuaccgGGAACAGCCc -3' miRNA: 3'- -CAGCGuaGCaGCAGGC---------UCUUGUCGGc -5' |
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12114 | 3' | -54.9 | NC_003309.1 | + | 8901 | 1.08 | 0.001458 |
Target: 5'- gGUCGCAUCGUCGUCCGAGAACAGCCGc -3' miRNA: 3'- -CAGCGUAGCAGCAGGCUCUUGUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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