miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12114 3' -54.9 NC_003309.1 + 46419 0.66 0.762945
Target:  5'- -cCGCGUCGUCaauaCCGAGcacccaucGCAGCCc -3'
miRNA:   3'- caGCGUAGCAGca--GGCUCu-------UGUCGGc -5'
12114 3' -54.9 NC_003309.1 + 11770 0.66 0.742324
Target:  5'- -aCGCGUCGgcgCGcCCGGcGAuCAGCCc -3'
miRNA:   3'- caGCGUAGCa--GCaGGCU-CUuGUCGGc -5'
12114 3' -54.9 NC_003309.1 + 6409 0.67 0.695527
Target:  5'- -cCGCGUCGUCcagauauucgaCGAGAACAGCa- -3'
miRNA:   3'- caGCGUAGCAGcag--------GCUCUUGUCGgc -5'
12114 3' -54.9 NC_003309.1 + 1013 0.67 0.689033
Target:  5'- -cCGCAccgaacUCGUCGU-CGAGGACGaacauGCCGa -3'
miRNA:   3'- caGCGU------AGCAGCAgGCUCUUGU-----CGGC- -5'
12114 3' -54.9 NC_003309.1 + 11095 0.67 0.667257
Target:  5'- cGUCGCAcugcucgCGUUGUCgCG-GAACAGCa- -3'
miRNA:   3'- -CAGCGUa------GCAGCAG-GCuCUUGUCGgc -5'
12114 3' -54.9 NC_003309.1 + 8168 0.68 0.64535
Target:  5'- -cCGCGUCGagGUCCGuuGAC-GCCa -3'
miRNA:   3'- caGCGUAGCagCAGGCucUUGuCGGc -5'
12114 3' -54.9 NC_003309.1 + 11592 0.68 0.64535
Target:  5'- aUUGU-UCG-CGUCCGAcAGCAGCCGc -3'
miRNA:   3'- cAGCGuAGCaGCAGGCUcUUGUCGGC- -5'
12114 3' -54.9 NC_003309.1 + 19499 0.68 0.601469
Target:  5'- aUCGCGUCGUCGcgaUUCGGcguGCGGCUGu -3'
miRNA:   3'- cAGCGUAGCAGC---AGGCUcu-UGUCGGC- -5'
12114 3' -54.9 NC_003309.1 + 8495 0.69 0.579648
Target:  5'- -aCGCuguaCGUCG-CCGAGAuCAGCCc -3'
miRNA:   3'- caGCGua--GCAGCaGGCUCUuGUCGGc -5'
12114 3' -54.9 NC_003309.1 + 31060 0.69 0.579648
Target:  5'- uUCGCGccUCGUCGcCCGGGGgaaauucuGgAGCCGu -3'
miRNA:   3'- cAGCGU--AGCAGCaGGCUCU--------UgUCGGC- -5'
12114 3' -54.9 NC_003309.1 + 47598 0.77 0.202475
Target:  5'- cGUCGCcgCGcCGUCCGgcuuuaccgGGAACAGCCc -3'
miRNA:   3'- -CAGCGuaGCaGCAGGC---------UCUUGUCGGc -5'
12114 3' -54.9 NC_003309.1 + 8901 1.08 0.001458
Target:  5'- gGUCGCAUCGUCGUCCGAGAACAGCCGc -3'
miRNA:   3'- -CAGCGUAGCAGCAGGCUCUUGUCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.