miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12114 5' -54.4 NC_003309.1 + 7618 0.66 0.791105
Target:  5'- cUCGGCc--UCGCCGAu--CGACGCa -3'
miRNA:   3'- aGGCCGcaaAGUGGCUucuGCUGCGc -5'
12114 5' -54.4 NC_003309.1 + 47733 0.66 0.791105
Target:  5'- gCCGGC----CGCCuu-GACGACGCGc -3'
miRNA:   3'- aGGCCGcaaaGUGGcuuCUGCUGCGC- -5'
12114 5' -54.4 NC_003309.1 + 35705 0.66 0.781297
Target:  5'- -aCGGCuucGUUUCGCuCGAAGGuCuGCGCGa -3'
miRNA:   3'- agGCCG---CAAAGUG-GCUUCU-GcUGCGC- -5'
12114 5' -54.4 NC_003309.1 + 22486 0.66 0.781297
Target:  5'- -aCGGCGgc-CACCGccGACGcggcggcaucguGCGCGg -3'
miRNA:   3'- agGCCGCaaaGUGGCuuCUGC------------UGCGC- -5'
12114 5' -54.4 NC_003309.1 + 25554 0.66 0.781297
Target:  5'- gUCgGGUGUagCggGCCGAAGACGcACGgGc -3'
miRNA:   3'- -AGgCCGCAaaG--UGGCUUCUGC-UGCgC- -5'
12114 5' -54.4 NC_003309.1 + 19073 0.66 0.771336
Target:  5'- -aCGGCGguggcugUACCGAAGGCGGaacaauCGUGa -3'
miRNA:   3'- agGCCGCaaa----GUGGCUUCUGCU------GCGC- -5'
12114 5' -54.4 NC_003309.1 + 13982 0.66 0.761232
Target:  5'- aUUCGGCcg--CACCGA---CGACGCGg -3'
miRNA:   3'- -AGGCCGcaaaGUGGCUucuGCUGCGC- -5'
12114 5' -54.4 NC_003309.1 + 27105 0.66 0.761232
Target:  5'- gCCGcaGUGccUUAUCGAGGACGACGUa -3'
miRNA:   3'- aGGC--CGCaaAGUGGCUUCUGCUGCGc -5'
12114 5' -54.4 NC_003309.1 + 12056 0.66 0.760215
Target:  5'- -gCGGCGUugguggauacgcgUgacgucugCGCCGcAGugGACGCGa -3'
miRNA:   3'- agGCCGCA-------------Aa-------GUGGCuUCugCUGCGC- -5'
12114 5' -54.4 NC_003309.1 + 15596 0.67 0.740645
Target:  5'- cUUCGGCaGUUgcuggcCACCGAAGucgaGCGGCGaCGa -3'
miRNA:   3'- -AGGCCG-CAAa-----GUGGCUUC----UGCUGC-GC- -5'
12114 5' -54.4 NC_003309.1 + 5402 0.68 0.654861
Target:  5'- aUCGGUGUcagCACCGAuguagccGACGAuCGCGc -3'
miRNA:   3'- aGGCCGCAaa-GUGGCUu------CUGCU-GCGC- -5'
12114 5' -54.4 NC_003309.1 + 18730 0.7 0.535589
Target:  5'- gUCGaGCGUgaucgucUCGCCGGcuGCGGCGCGg -3'
miRNA:   3'- aGGC-CGCAa------AGUGGCUucUGCUGCGC- -5'
12114 5' -54.4 NC_003309.1 + 16019 0.7 0.525034
Target:  5'- -gCGGCGUagUCAUCGGAuGCGAgCGCGa -3'
miRNA:   3'- agGCCGCAa-AGUGGCUUcUGCU-GCGC- -5'
12114 5' -54.4 NC_003309.1 + 25250 0.72 0.443937
Target:  5'- gUCCGGCccucGUgaCAUCGAcugcgGGACGACGCu -3'
miRNA:   3'- -AGGCCG----CAaaGUGGCU-----UCUGCUGCGc -5'
12114 5' -54.4 NC_003309.1 + 7760 0.75 0.290789
Target:  5'- gCCGGCGccUUCGCCGGu-GCGACGCc -3'
miRNA:   3'- aGGCCGCa-AAGUGGCUucUGCUGCGc -5'
12114 5' -54.4 NC_003309.1 + 8865 1.1 0.001244
Target:  5'- gUCCGGCGUUUCACCGAAGACGACGCGa -3'
miRNA:   3'- -AGGCCGCAAAGUGGCUUCUGCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.