miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12115 5' -54.2 NC_003309.1 + 9146 1.11 0.000856
Target:  5'- aUCAUCUGCAACCGGCGAUUCCGCGUCa -3'
miRNA:   3'- -AGUAGACGUUGGCCGCUAAGGCGCAG- -5'
12115 5' -54.2 NC_003309.1 + 44223 0.74 0.298186
Target:  5'- cCGUCUGcCAACCGGCGA--CCGCu-- -3'
miRNA:   3'- aGUAGAC-GUUGGCCGCUaaGGCGcag -5'
12115 5' -54.2 NC_003309.1 + 41701 0.69 0.606596
Target:  5'- -aAUUUGacaAGCCGGCcgcgcUCCGCGUCg -3'
miRNA:   3'- agUAGACg--UUGGCCGcua--AGGCGCAG- -5'
12115 5' -54.2 NC_003309.1 + 46446 0.69 0.606596
Target:  5'- cUCAUUcgGCGGCCuccuguGCGcuUUCCGCGUCg -3'
miRNA:   3'- -AGUAGa-CGUUGGc-----CGCu-AAGGCGCAG- -5'
12115 5' -54.2 NC_003309.1 + 8559 0.68 0.651117
Target:  5'- cUAUCUGCGAUCGGgGAguuacgCCGCc-- -3'
miRNA:   3'- aGUAGACGUUGGCCgCUaa----GGCGcag -5'
12115 5' -54.2 NC_003309.1 + 48474 0.68 0.639987
Target:  5'- aUCGUCagcccgcgGCGGCCGGCc-UUCCGCuUCa -3'
miRNA:   3'- -AGUAGa-------CGUUGGCCGcuAAGGCGcAG- -5'
12115 5' -54.2 NC_003309.1 + 47021 0.67 0.71713
Target:  5'- gCA-CUGCAcgCGGCGAUUggCGCGUCu -3'
miRNA:   3'- aGUaGACGUugGCCGCUAAg-GCGCAG- -5'
12115 5' -54.2 NC_003309.1 + 11988 0.67 0.706275
Target:  5'- cCcgCgcgcgGCAGCCgcGGCGcgcgCCGCGUCg -3'
miRNA:   3'- aGuaGa----CGUUGG--CCGCuaa-GGCGCAG- -5'
12115 5' -54.2 NC_003309.1 + 31921 0.66 0.727899
Target:  5'- -----cGCGGCCGGCGccagCGCGUCu -3'
miRNA:   3'- aguagaCGUUGGCCGCuaagGCGCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.