Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12118 | 3' | -59.2 | NC_003309.1 | + | 13099 | 0.66 | 0.542891 |
Target: 5'- cCCGGCugcGACaccacuGCGGCGCGgaccacgaacUCGCCGu -3' miRNA: 3'- -GGCCGua-CUGcc----UGCCGCGU----------AGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 9405 | 0.66 | 0.542891 |
Target: 5'- aCCGcGCAUGcgGCGGucguauuCGGuCGUAuUCGCCGu -3' miRNA: 3'- -GGC-CGUAC--UGCCu------GCC-GCGU-AGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 11757 | 0.66 | 0.541855 |
Target: 5'- cCCGGCGaucagccccgccaUG-CGGACcuGCGCGUCGUUc -3' miRNA: 3'- -GGCCGU-------------ACuGCCUGc-CGCGUAGCGGu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 43563 | 0.66 | 0.532554 |
Target: 5'- aCGGCGgcGACGuGACGaucgucugcacGCGCA-CGCCGu -3' miRNA: 3'- gGCCGUa-CUGC-CUGC-----------CGCGUaGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 11981 | 0.66 | 0.522288 |
Target: 5'- gCGGCAgccGCGG-CGcGCGCcgCGUCGg -3' miRNA: 3'- gGCCGUac-UGCCuGC-CGCGuaGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 8534 | 0.66 | 0.512099 |
Target: 5'- gCCGGC--GGCGGcacgagcuuCGGCGCAcCGCUc -3' miRNA: 3'- -GGCCGuaCUGCCu--------GCCGCGUaGCGGu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 37916 | 0.66 | 0.501993 |
Target: 5'- uUCGGCggGGCGGcccguAUGcGCGCccCGCCAu -3' miRNA: 3'- -GGCCGuaCUGCC-----UGC-CGCGuaGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 31477 | 0.67 | 0.443376 |
Target: 5'- gCCGGCGgcgaaaGCGGccACGGCGCc-CGCCc -3' miRNA: 3'- -GGCCGUac----UGCC--UGCCGCGuaGCGGu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 3569 | 0.67 | 0.452883 |
Target: 5'- aCUGGCGcccGACcgcguaGGCGGCGUAUCGCg- -3' miRNA: 3'- -GGCCGUa--CUGc-----CUGCCGCGUAGCGgu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 30178 | 0.67 | 0.456717 |
Target: 5'- aCUGGCGgaagagcgGAagaaacgcgaacgucCGGACGGCGCAggggauaugCGCCc -3' miRNA: 3'- -GGCCGUa-------CU---------------GCCUGCCGCGUa--------GCGGu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 34750 | 0.68 | 0.405612 |
Target: 5'- gCGGaugaugaagcuCGUGuuGGACGGCuacacucgcaacgGCAUCGCCAc -3' miRNA: 3'- gGCC-----------GUACugCCUGCCG-------------CGUAGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 17788 | 0.71 | 0.279734 |
Target: 5'- uUCGGCGUGAU--ACGGCGCAcacggaUCaGCCAg -3' miRNA: 3'- -GGCCGUACUGccUGCCGCGU------AG-CGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 48038 | 0.71 | 0.253392 |
Target: 5'- aCCGGCGUGAagagUGGcCGGuCGagGUCGCCGg -3' miRNA: 3'- -GGCCGUACU----GCCuGCC-GCg-UAGCGGU- -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 11240 | 0.73 | 0.186471 |
Target: 5'- uCCGGUAc-GCGGACuGCGCGUCGUCu -3' miRNA: 3'- -GGCCGUacUGCCUGcCGCGUAGCGGu -5' |
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12118 | 3' | -59.2 | NC_003309.1 | + | 11310 | 1.1 | 0.000406 |
Target: 5'- uCCGGCAUGACGGACGGCGCAUCGCCAa -3' miRNA: 3'- -GGCCGUACUGCCUGCCGCGUAGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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