miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12118 5' -55 NC_003309.1 + 24029 0.68 0.561309
Target:  5'- --cGACACg--GCuccaCCGCCCGuCGUCGa -3'
miRNA:   3'- guaCUGUGaaaCGc---GGCGGGC-GUAGC- -5'
12118 5' -55 NC_003309.1 + 11273 1.08 0.001182
Target:  5'- cCAUGACACUUUGCGCCGCCCGCAUCGc -3'
miRNA:   3'- -GUACUGUGAAACGCGGCGGGCGUAGC- -5'
12118 5' -55 NC_003309.1 + 48837 0.72 0.354228
Target:  5'- -cUGACGCUUcaGCGUCGCCguuCGCGUCa -3'
miRNA:   3'- guACUGUGAAa-CGCGGCGG---GCGUAGc -5'
12118 5' -55 NC_003309.1 + 10306 0.72 0.354228
Target:  5'- ---cACGCUgu-CGCCGCCUGCGUCGc -3'
miRNA:   3'- guacUGUGAaacGCGGCGGGCGUAGC- -5'
12118 5' -55 NC_003309.1 + 25390 0.71 0.426884
Target:  5'- uCGUGcCACUgcgUGUaGCCGUCgGCGUCGg -3'
miRNA:   3'- -GUACuGUGAa--ACG-CGGCGGgCGUAGC- -5'
12118 5' -55 NC_003309.1 + 27746 0.71 0.426884
Target:  5'- --aGACGac--GCGCCGCCCggcGCAUCGc -3'
miRNA:   3'- guaCUGUgaaaCGCGGCGGG---CGUAGC- -5'
12118 5' -55 NC_003309.1 + 10581 0.7 0.446385
Target:  5'- aCAUG-CGC-UUGCGCCGC-CGCcUCGa -3'
miRNA:   3'- -GUACuGUGaAACGCGGCGgGCGuAGC- -5'
12118 5' -55 NC_003309.1 + 19890 0.7 0.497191
Target:  5'- --cGAuCGCUgcUGCGCCGCgaCCGUGUCGa -3'
miRNA:   3'- guaCU-GUGAa-ACGCGGCG--GGCGUAGC- -5'
12118 5' -55 NC_003309.1 + 22143 0.69 0.528893
Target:  5'- --cGACAC---GCGCCccgccagucGCCCGCAUUGa -3'
miRNA:   3'- guaCUGUGaaaCGCGG---------CGGGCGUAGC- -5'
12118 5' -55 NC_003309.1 + 10384 0.69 0.528893
Target:  5'- ---uGCGCUUUggcgaGCGCCGCCUGCGcCGc -3'
miRNA:   3'- guacUGUGAAA-----CGCGGCGGGCGUaGC- -5'
12118 5' -55 NC_003309.1 + 10071 0.65 0.736874
Target:  5'- --cGAacaGCguauccGUGCCGCCCGCcgCGc -3'
miRNA:   3'- guaCUg--UGaaa---CGCGGCGGGCGuaGC- -5'
12118 5' -55 NC_003309.1 + 53052 0.68 0.583222
Target:  5'- gCAUGACGa-UUGC-CgCGCaCCGCGUCGg -3'
miRNA:   3'- -GUACUGUgaAACGcG-GCG-GGCGUAGC- -5'
12118 5' -55 NC_003309.1 + 44133 0.68 0.594245
Target:  5'- gGUGAUGCU---CGUCGCCCGCcgCa -3'
miRNA:   3'- gUACUGUGAaacGCGGCGGGCGuaGc -5'
12118 5' -55 NC_003309.1 + 22394 0.68 0.616379
Target:  5'- gCAUGcCGCUgcGCGUcgaaCGCCCGCG-CGg -3'
miRNA:   3'- -GUACuGUGAaaCGCG----GCGGGCGUaGC- -5'
12118 5' -55 NC_003309.1 + 33004 0.67 0.64966
Target:  5'- --cGACACU---UGCCGCauCCGCAUCu -3'
miRNA:   3'- guaCUGUGAaacGCGGCG--GGCGUAGc -5'
12118 5' -55 NC_003309.1 + 12039 0.67 0.64966
Target:  5'- gCGUGACGuc-UGCGCCGCaguggaCGCgAUCGu -3'
miRNA:   3'- -GUACUGUgaaACGCGGCGg-----GCG-UAGC- -5'
12118 5' -55 NC_003309.1 + 1986 0.67 0.660735
Target:  5'- --cGACAgguucgUUGCGCCGUgCGgGUCGa -3'
miRNA:   3'- guaCUGUga----AACGCGGCGgGCgUAGC- -5'
12118 5' -55 NC_003309.1 + 20023 0.66 0.682792
Target:  5'- --cGACGgUUUGCaCCGCCgcCGCGUUGu -3'
miRNA:   3'- guaCUGUgAAACGcGGCGG--GCGUAGC- -5'
12118 5' -55 NC_003309.1 + 52383 0.66 0.704652
Target:  5'- gCAUGACGaagaUGCGCUcgccgcagcaGCCgGCAUCa -3'
miRNA:   3'- -GUACUGUgaa-ACGCGG----------CGGgCGUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.