miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12119 5' -51.8 NC_003309.1 + 4411 0.66 0.89041
Target:  5'- -gCGGCucaUGCGGggUGAGaUCGUUc -3'
miRNA:   3'- gaGCCGua-ACGCCuuGCUUgAGCAGu -5'
12119 5' -51.8 NC_003309.1 + 12768 1.1 0.002113
Target:  5'- cCUCGGCAUUGCGGAACGAACUCGUCAg -3'
miRNA:   3'- -GAGCCGUAACGCCUUGCUUGAGCAGU- -5'
12119 5' -51.8 NC_003309.1 + 13081 0.68 0.803625
Target:  5'- -gCGGC---GCGGAccACGAACUCGcCGu -3'
miRNA:   3'- gaGCCGuaaCGCCU--UGCUUGAGCaGU- -5'
12119 5' -51.8 NC_003309.1 + 19038 0.66 0.897692
Target:  5'- aUCGGcCGUUGCuGGAucuGCGcGCcgUCGUCGa -3'
miRNA:   3'- gAGCC-GUAACG-CCU---UGCuUG--AGCAGU- -5'
12119 5' -51.8 NC_003309.1 + 22398 0.66 0.88892
Target:  5'- uUCGGCAUgccgcUGCGcgucGAACGcccgcgcggccuGCUCGUCGg -3'
miRNA:   3'- gAGCCGUA-----ACGC----CUUGCu-----------UGAGCAGU- -5'
12119 5' -51.8 NC_003309.1 + 23021 0.68 0.773461
Target:  5'- uUCGGaaagcGCGGGAUGAugUgGUCAg -3'
miRNA:   3'- gAGCCguaa-CGCCUUGCUugAgCAGU- -5'
12119 5' -51.8 NC_003309.1 + 33800 0.66 0.858589
Target:  5'- gUUGGCug-GCGGGuC-AGCUCGUCGa -3'
miRNA:   3'- gAGCCGuaaCGCCUuGcUUGAGCAGU- -5'
12119 5' -51.8 NC_003309.1 + 43499 0.66 0.875025
Target:  5'- -gCGGCAgucuccGCGGuGCGAACg-GUCAa -3'
miRNA:   3'- gaGCCGUaa----CGCCuUGCUUGagCAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.