miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12121 3' -59.8 NC_003309.1 + 5561 0.66 0.514927
Target:  5'- cGCGcGCGCCGaucGCGGCggugaggucGCcGACCACGa -3'
miRNA:   3'- -CGC-UGUGGUga-CGCCG---------CGcCUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 11208 0.66 0.484946
Target:  5'- cGCGACGCCucCUGCuucGUGCGcaGCCGCu -3'
miRNA:   3'- -CGCUGUGGu-GACGc--CGCGCc-UGGUGc -5'
12121 3' -59.8 NC_003309.1 + 15506 0.66 0.483961
Target:  5'- cCGcCACUGCUGCGGCGgcauuucuucguuCGGGuCCGCc -3'
miRNA:   3'- cGCuGUGGUGACGCCGC-------------GCCU-GGUGc -5'
12121 3' -59.8 NC_003309.1 + 50038 0.67 0.455825
Target:  5'- uCGACGuCCAUcaGCuucGUGCGGACCGCGc -3'
miRNA:   3'- cGCUGU-GGUGa-CGc--CGCGCCUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 46787 0.67 0.427673
Target:  5'- cGCGugGCCGCUGCGcGaGCuGucACCGCa -3'
miRNA:   3'- -CGCugUGGUGACGC-CgCGcC--UGGUGc -5'
12121 3' -59.8 NC_003309.1 + 32928 0.68 0.391789
Target:  5'- cGCGGCAagcaaCAacggcuaUGCGGC-CGGACUGCGc -3'
miRNA:   3'- -CGCUGUg----GUg------ACGCCGcGCCUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 47483 0.68 0.38313
Target:  5'- aGCGACACCuucGCcGCcgGGCGUGu-CCACGg -3'
miRNA:   3'- -CGCUGUGG---UGaCG--CCGCGCcuGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 10843 0.68 0.357925
Target:  5'- cGCGACAUCACgcucgGCucGCGCGaGGCCGUGa -3'
miRNA:   3'- -CGCUGUGGUGa----CGc-CGCGC-CUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 44188 0.68 0.357925
Target:  5'- uUGACGCC-C-GCGGCGCGcuGCCGCu -3'
miRNA:   3'- cGCUGUGGuGaCGCCGCGCc-UGGUGc -5'
12121 3' -59.8 NC_003309.1 + 31486 0.69 0.341779
Target:  5'- uGgGugAUCGCcgGCGGCGaaaGcGGCCACGg -3'
miRNA:   3'- -CgCugUGGUGa-CGCCGCg--C-CUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 22661 0.69 0.326166
Target:  5'- gGCGGCACCAUcgcccacgccgGCGGCGCuGGAa-GCGc -3'
miRNA:   3'- -CGCUGUGGUGa----------CGCCGCG-CCUggUGC- -5'
12121 3' -59.8 NC_003309.1 + 22451 0.69 0.326166
Target:  5'- gGCGAuCGCaCGCUGcCGGCGUcGAgCGCGg -3'
miRNA:   3'- -CGCU-GUG-GUGAC-GCCGCGcCUgGUGC- -5'
12121 3' -59.8 NC_003309.1 + 39178 0.69 0.321586
Target:  5'- cGCGccCGCC-CUGCGGgcaaucacaacccacCGgGGACCGCGa -3'
miRNA:   3'- -CGCu-GUGGuGACGCC---------------GCgCCUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 37299 0.69 0.311088
Target:  5'- cGCGACGCC-CUGaaucucgcCGGCGCGucGAUgGCGg -3'
miRNA:   3'- -CGCUGUGGuGAC--------GCCGCGC--CUGgUGC- -5'
12121 3' -59.8 NC_003309.1 + 16125 0.71 0.249819
Target:  5'- cGCGAUGCCGCUGCGcucgcacaucGCGCGauCCGCu -3'
miRNA:   3'- -CGCUGUGGUGACGC----------CGCGCcuGGUGc -5'
12121 3' -59.8 NC_003309.1 + 12091 0.72 0.225949
Target:  5'- aGUGaACGCCACUGCccuucgcuaCGCGGGCCGCc -3'
miRNA:   3'- -CGC-UGUGGUGACGcc-------GCGCCUGGUGc -5'
12121 3' -59.8 NC_003309.1 + 9571 0.72 0.22254
Target:  5'- cCGaACGCCGCUGCGGCggcuugugcguauucGCGGAUCGa- -3'
miRNA:   3'- cGC-UGUGGUGACGCCG---------------CGCCUGGUgc -5'
12121 3' -59.8 NC_003309.1 + 11982 0.73 0.184
Target:  5'- cGCGGCA--GCcGCGGCGCGcGCCGCGu -3'
miRNA:   3'- -CGCUGUggUGaCGCCGCGCcUGGUGC- -5'
12121 3' -59.8 NC_003309.1 + 18726 0.75 0.130431
Target:  5'- aGCGugAUCgucucgccgGCUGCGGCGCGGA-UACGg -3'
miRNA:   3'- -CGCugUGG---------UGACGCCGCGCCUgGUGC- -5'
12121 3' -59.8 NC_003309.1 + 13093 1.1 0.000327
Target:  5'- uGCGACACCACUGCGGCGCGGACCACGa -3'
miRNA:   3'- -CGCUGUGGUGACGCCGCGCCUGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.