miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12122 5' -55.9 NC_003309.1 + 4256 0.66 0.666061
Target:  5'- ---gCUGCggCUGCGAUCagguaGCcGCCCg -3'
miRNA:   3'- aaagGGCGuaGACGCUAGg----UGuCGGG- -5'
12122 5' -55.9 NC_003309.1 + 18543 0.66 0.654974
Target:  5'- --gCCUGCGcCUGCGAcgUGCAGCCg -3'
miRNA:   3'- aaaGGGCGUaGACGCUagGUGUCGGg -5'
12122 5' -55.9 NC_003309.1 + 9129 0.66 0.621627
Target:  5'- -aUUCCGCGUCaaaccCGAUCCAgagacuCAGCUCg -3'
miRNA:   3'- aaAGGGCGUAGac---GCUAGGU------GUCGGG- -5'
12122 5' -55.9 NC_003309.1 + 46423 0.66 0.610516
Target:  5'- cUUUCCGCGUCgucaauacCGAgcacccaUCGCAGCCCg -3'
miRNA:   3'- aAAGGGCGUAGac------GCUa------GGUGUCGGG- -5'
12122 5' -55.9 NC_003309.1 + 22813 0.66 0.610516
Target:  5'- gUUUCUCGUuacuUCUGU---UCGCAGCCCg -3'
miRNA:   3'- -AAAGGGCGu---AGACGcuaGGUGUCGGG- -5'
12122 5' -55.9 NC_003309.1 + 22546 0.66 0.610516
Target:  5'- --gCCCGCAggCUGCGAcucUCUGCuucauGCUCg -3'
miRNA:   3'- aaaGGGCGUa-GACGCU---AGGUGu----CGGG- -5'
12122 5' -55.9 NC_003309.1 + 37644 0.68 0.533778
Target:  5'- gUUCCuCGCGgccggCUGCGAuaacgUCC-CGGCCg -3'
miRNA:   3'- aAAGG-GCGUa----GACGCU-----AGGuGUCGGg -5'
12122 5' -55.9 NC_003309.1 + 20495 0.68 0.523062
Target:  5'- -aUCCCGCAUCcaUGCucaCCACAuCCCc -3'
miRNA:   3'- aaAGGGCGUAG--ACGcuaGGUGUcGGG- -5'
12122 5' -55.9 NC_003309.1 + 44721 0.68 0.501888
Target:  5'- gUUUCCgGUAUCcGCca-UCACAGCCCg -3'
miRNA:   3'- -AAAGGgCGUAGaCGcuaGGUGUCGGG- -5'
12122 5' -55.9 NC_003309.1 + 29823 0.69 0.470862
Target:  5'- ----aCGCAUUUugccGCGAUCCGCAGCgCg -3'
miRNA:   3'- aaaggGCGUAGA----CGCUAGGUGUCGgG- -5'
12122 5' -55.9 NC_003309.1 + 3975 0.69 0.44084
Target:  5'- --gCCCGUAUCUGCGA-CCAaGGCa- -3'
miRNA:   3'- aaaGGGCGUAGACGCUaGGUgUCGgg -5'
12122 5' -55.9 NC_003309.1 + 32999 0.72 0.316632
Target:  5'- cUUgCCGCAUCcGCaucUUCGCAGCCCg -3'
miRNA:   3'- aAAgGGCGUAGaCGcu-AGGUGUCGGG- -5'
12122 5' -55.9 NC_003309.1 + 7223 0.73 0.272081
Target:  5'- --aCCCGCGUUUGCGcgCCGgCAGUaCCg -3'
miRNA:   3'- aaaGGGCGUAGACGCuaGGU-GUCG-GG- -5'
12122 5' -55.9 NC_003309.1 + 13943 1.1 0.000608
Target:  5'- cUUUCCCGCAUCUGCGAUCCACAGCCCg -3'
miRNA:   3'- -AAAGGGCGUAGACGCUAGGUGUCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.