Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12122 | 5' | -55.9 | NC_003309.1 | + | 4256 | 0.66 | 0.666061 |
Target: 5'- ---gCUGCggCUGCGAUCagguaGCcGCCCg -3' miRNA: 3'- aaagGGCGuaGACGCUAGg----UGuCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 18543 | 0.66 | 0.654974 |
Target: 5'- --gCCUGCGcCUGCGAcgUGCAGCCg -3' miRNA: 3'- aaaGGGCGUaGACGCUagGUGUCGGg -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 9129 | 0.66 | 0.621627 |
Target: 5'- -aUUCCGCGUCaaaccCGAUCCAgagacuCAGCUCg -3' miRNA: 3'- aaAGGGCGUAGac---GCUAGGU------GUCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 46423 | 0.66 | 0.610516 |
Target: 5'- cUUUCCGCGUCgucaauacCGAgcacccaUCGCAGCCCg -3' miRNA: 3'- aAAGGGCGUAGac------GCUa------GGUGUCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 22813 | 0.66 | 0.610516 |
Target: 5'- gUUUCUCGUuacuUCUGU---UCGCAGCCCg -3' miRNA: 3'- -AAAGGGCGu---AGACGcuaGGUGUCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 22546 | 0.66 | 0.610516 |
Target: 5'- --gCCCGCAggCUGCGAcucUCUGCuucauGCUCg -3' miRNA: 3'- aaaGGGCGUa-GACGCU---AGGUGu----CGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 37644 | 0.68 | 0.533778 |
Target: 5'- gUUCCuCGCGgccggCUGCGAuaacgUCC-CGGCCg -3' miRNA: 3'- aAAGG-GCGUa----GACGCU-----AGGuGUCGGg -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 20495 | 0.68 | 0.523062 |
Target: 5'- -aUCCCGCAUCcaUGCucaCCACAuCCCc -3' miRNA: 3'- aaAGGGCGUAG--ACGcuaGGUGUcGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 44721 | 0.68 | 0.501888 |
Target: 5'- gUUUCCgGUAUCcGCca-UCACAGCCCg -3' miRNA: 3'- -AAAGGgCGUAGaCGcuaGGUGUCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 29823 | 0.69 | 0.470862 |
Target: 5'- ----aCGCAUUUugccGCGAUCCGCAGCgCg -3' miRNA: 3'- aaaggGCGUAGA----CGCUAGGUGUCGgG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 3975 | 0.69 | 0.44084 |
Target: 5'- --gCCCGUAUCUGCGA-CCAaGGCa- -3' miRNA: 3'- aaaGGGCGUAGACGCUaGGUgUCGgg -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 32999 | 0.72 | 0.316632 |
Target: 5'- cUUgCCGCAUCcGCaucUUCGCAGCCCg -3' miRNA: 3'- aAAgGGCGUAGaCGcu-AGGUGUCGGG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 7223 | 0.73 | 0.272081 |
Target: 5'- --aCCCGCGUUUGCGcgCCGgCAGUaCCg -3' miRNA: 3'- aaaGGGCGUAGACGCuaGGU-GUCG-GG- -5' |
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12122 | 5' | -55.9 | NC_003309.1 | + | 13943 | 1.1 | 0.000608 |
Target: 5'- cUUUCCCGCAUCUGCGAUCCACAGCCCg -3' miRNA: 3'- -AAAGGGCGUAGACGCUAGGUGUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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