miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12123 3' -55.9 NC_003309.1 + 5610 0.67 0.636291
Target:  5'- cCCUUCGgggUGUUCgccGuGCCGUcguCGCGAAu -3'
miRNA:   3'- -GGAAGCa--GCAAGa--CuCGGCG---GCGCUU- -5'
12123 3' -55.9 NC_003309.1 + 5154 0.67 0.614354
Target:  5'- gCUgcgCGUCGccgCgc-GCCGCCGCGAGc -3'
miRNA:   3'- gGAa--GCAGCaa-GacuCGGCGGCGCUU- -5'
12123 3' -55.9 NC_003309.1 + 45531 0.67 0.614354
Target:  5'- ----gGUCGUaUUGAcgGCCGCCGCGGc -3'
miRNA:   3'- ggaagCAGCAaGACU--CGGCGGCGCUu -5'
12123 3' -55.9 NC_003309.1 + 12077 0.69 0.51738
Target:  5'- cCCUUCGcuaCGc---GGGCCGCCGCGGc -3'
miRNA:   3'- -GGAAGCa--GCaagaCUCGGCGGCGCUu -5'
12123 3' -55.9 NC_003309.1 + 8344 0.71 0.381127
Target:  5'- cCCUUCGUCGUUCgacugGuaauuGCCGUCGacCGAGa -3'
miRNA:   3'- -GGAAGCAGCAAGa----Cu----CGGCGGC--GCUU- -5'
12123 3' -55.9 NC_003309.1 + 2481 0.73 0.299605
Target:  5'- uCCUUCGcugaacgacUCGcgCagcgcGAGCCGCCGCGAGa -3'
miRNA:   3'- -GGAAGC---------AGCaaGa----CUCGGCGGCGCUU- -5'
12123 3' -55.9 NC_003309.1 + 14210 1.08 0.000999
Target:  5'- cCCUUCGUCGUUCUGAGCCGCCGCGAAg -3'
miRNA:   3'- -GGAAGCAGCAAGACUCGGCGGCGCUU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.