miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12124 3' -51.6 NC_003309.1 + 52219 0.66 0.908376
Target:  5'- aACGcaau-GUCGCuCG-CCUCGUCGAu -3'
miRNA:   3'- gUGCuacuuUAGCG-GCaGGAGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 20236 0.76 0.361664
Target:  5'- gCACGAcGAacggcgcaccGAUCacaccggaGCCGUCCUCGUCGAu -3'
miRNA:   3'- -GUGCUaCU----------UUAG--------CGGCAGGAGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 28685 0.74 0.4865
Target:  5'- aCAUGAUGGGAUCGCCcUCggCGUUGAc -3'
miRNA:   3'- -GUGCUACUUUAGCGGcAGgaGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 5545 0.72 0.605932
Target:  5'- gGCGGUGAGGUCGCCGaCCaCGaucugaUCGAc -3'
miRNA:   3'- gUGCUACUUUAGCGGCaGGaGC------AGCU- -5'
12124 3' -51.6 NC_003309.1 + 30378 0.69 0.749094
Target:  5'- aGCGA--AAAagGCCGgCCUCGUCGGg -3'
miRNA:   3'- gUGCUacUUUagCGGCaGGAGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 15702 0.69 0.749094
Target:  5'- gCGCGGgaucgcucacGggGUUGUCGUCCUUGUCa- -3'
miRNA:   3'- -GUGCUa---------CuuUAGCGGCAGGAGCAGcu -5'
12124 3' -51.6 NC_003309.1 + 48021 0.69 0.780133
Target:  5'- -cCGGUcGAGGUCGCCGgaugcgaUUUCGUCGAa -3'
miRNA:   3'- guGCUA-CUUUAGCGGCa------GGAGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 18748 0.68 0.800053
Target:  5'- gGCGAU--AGUCGgCG-CCUUGUCGAg -3'
miRNA:   3'- gUGCUAcuUUAGCgGCaGGAGCAGCU- -5'
12124 3' -51.6 NC_003309.1 + 51795 0.66 0.88715
Target:  5'- aACGGUuuAAUCGCCGUCUUCa---- -3'
miRNA:   3'- gUGCUAcuUUAGCGGCAGGAGcagcu -5'
12124 3' -51.6 NC_003309.1 + 5606 0.66 0.88715
Target:  5'- uCGgGGUGu--UCGCCGUgCCgUCGUCGc -3'
miRNA:   3'- -GUgCUACuuuAGCGGCA-GG-AGCAGCu -5'
12124 3' -51.6 NC_003309.1 + 14942 1.09 0.002711
Target:  5'- gCACGAUGAAAUCGCCGUCCUCGUCGAu -3'
miRNA:   3'- -GUGCUACUUUAGCGGCAGGAGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.