miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12125 5' -54.5 NC_003309.1 + 16252 1.09 0.000984
Target:  5'- cGUGCACACCAUGCACGAAUGGGCGACc -3'
miRNA:   3'- -CACGUGUGGUACGUGCUUACCCGCUG- -5'
12125 5' -54.5 NC_003309.1 + 41303 0.69 0.536821
Target:  5'- -cGCACGCC-UGCG-GGAUGGGaaCGGCu -3'
miRNA:   3'- caCGUGUGGuACGUgCUUACCC--GCUG- -5'
12125 5' -54.5 NC_003309.1 + 12861 0.68 0.569814
Target:  5'- -cGCGCGCCGaaaaccGCGCGAGgucGGCGAUc -3'
miRNA:   3'- caCGUGUGGUa-----CGUGCUUac-CCGCUG- -5'
12125 5' -54.5 NC_003309.1 + 9320 0.68 0.569814
Target:  5'- -cGCcuacuuCGCCAUGCGCaucaGGGCGGCu -3'
miRNA:   3'- caCGu-----GUGGUACGUGcuuaCCCGCUG- -5'
12125 5' -54.5 NC_003309.1 + 42931 0.67 0.648216
Target:  5'- --cCGCGCCAUGCaggcGCGAucuacugcauUGGGCGAg -3'
miRNA:   3'- cacGUGUGGUACG----UGCUu---------ACCCGCUg -5'
12125 5' -54.5 NC_003309.1 + 9510 0.67 0.648216
Target:  5'- -cGCGCACCGugaccUGCACGcuUGcGGCGu- -3'
miRNA:   3'- caCGUGUGGU-----ACGUGCuuAC-CCGCug -5'
12125 5' -54.5 NC_003309.1 + 32968 0.67 0.636979
Target:  5'- -cGCGCGCUgagGCGCGAGaGcGCGACg -3'
miRNA:   3'- caCGUGUGGua-CGUGCUUaCcCGCUG- -5'
12125 5' -54.5 NC_003309.1 + 52965 0.67 0.635855
Target:  5'- -aGCGCACCGcacccccggugcuUGCACGGcuucAUcGGGCGuCg -3'
miRNA:   3'- caCGUGUGGU-------------ACGUGCU----UA-CCCGCuG- -5'
12125 5' -54.5 NC_003309.1 + 45222 0.66 0.736601
Target:  5'- -gGCACuCCA-GCGCaGAAUgGGGCGGu -3'
miRNA:   3'- caCGUGuGGUaCGUG-CUUA-CCCGCUg -5'
12125 5' -54.5 NC_003309.1 + 36860 0.66 0.725809
Target:  5'- --cCACGCCcgGCucuccccuCGGAuaUGGGCGGCc -3'
miRNA:   3'- cacGUGUGGuaCGu-------GCUU--ACCCGCUG- -5'
12125 5' -54.5 NC_003309.1 + 46638 0.66 0.690682
Target:  5'- -aGCGCACCGgccuccuccaacGUGCGAA-GGGuCGACg -3'
miRNA:   3'- caCGUGUGGUa-----------CGUGCUUaCCC-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.