miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12127 3' -60.5 NC_003309.1 + 47776 0.67 0.39384
Target:  5'- aGCgGGCAGCcuCGCGCAgcauuuccuccaUCGCCU-CGCc -3'
miRNA:   3'- -UGgCUGUCGc-GCGCGU------------GGCGGAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 22468 0.67 0.39384
Target:  5'- -nCGGCGGCauCGUGCGCgGCgaUCGCa -3'
miRNA:   3'- ugGCUGUCGc-GCGCGUGgCGgaAGCG- -5'
12127 3' -60.5 NC_003309.1 + 2470 0.67 0.39384
Target:  5'- -aCGACucGCGCaGCGCgaGCCGCCgcgagaucCGCa -3'
miRNA:   3'- ugGCUGu-CGCG-CGCG--UGGCGGaa------GCG- -5'
12127 3' -60.5 NC_003309.1 + 10056 0.67 0.385126
Target:  5'- uGCCGcccGCcGCGCGCGuCAgCGCCU-CGa -3'
miRNA:   3'- -UGGC---UGuCGCGCGC-GUgGCGGAaGCg -5'
12127 3' -60.5 NC_003309.1 + 17571 0.67 0.376542
Target:  5'- cGCCGA-AGCGCacaCGCACCGCggucagUUGCg -3'
miRNA:   3'- -UGGCUgUCGCGc--GCGUGGCGga----AGCG- -5'
12127 3' -60.5 NC_003309.1 + 10334 0.67 0.373144
Target:  5'- cUCGACgAGCGCucgccggGCGCcgacccacgcugucGCCGCCUgcgUCGCc -3'
miRNA:   3'- uGGCUG-UCGCG-------CGCG--------------UGGCGGA---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 15905 0.67 0.368087
Target:  5'- cGCgGAUacucugcgAGCGCGUGCGCCucgaucGCCUUCu- -3'
miRNA:   3'- -UGgCUG--------UCGCGCGCGUGG------CGGAAGcg -5'
12127 3' -60.5 NC_003309.1 + 11233 0.67 0.368087
Target:  5'- cGCgGACuGCGCGuCGU-CUGCCgcgCGCg -3'
miRNA:   3'- -UGgCUGuCGCGC-GCGuGGCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 13167 0.68 0.351572
Target:  5'- cACCcGCGGCGaauCGCGCGaaGCCggaUCGCc -3'
miRNA:   3'- -UGGcUGUCGC---GCGCGUggCGGa--AGCG- -5'
12127 3' -60.5 NC_003309.1 + 32754 0.68 0.346721
Target:  5'- cGCUGcaGCAgGCGUGCGCGCuguCGCCUacgagcugcgcaugcUCGCu -3'
miRNA:   3'- -UGGC--UGU-CGCGCGCGUG---GCGGA---------------AGCG- -5'
12127 3' -60.5 NC_003309.1 + 16784 0.68 0.343514
Target:  5'- gGCCGuugaacACGGCGaaCGUGagGCCGCCgUCGCg -3'
miRNA:   3'- -UGGC------UGUCGC--GCGCg-UGGCGGaAGCG- -5'
12127 3' -60.5 NC_003309.1 + 1258 0.68 0.343514
Target:  5'- uUCGuACAGCGCG-GCGCUGUCgugcUCGUg -3'
miRNA:   3'- uGGC-UGUCGCGCgCGUGGCGGa---AGCG- -5'
12127 3' -60.5 NC_003309.1 + 32024 0.68 0.343514
Target:  5'- gGCCGugAacuggggacCGgGCGCACCGCggcgUCGCa -3'
miRNA:   3'- -UGGCugUc--------GCgCGCGUGGCGga--AGCG- -5'
12127 3' -60.5 NC_003309.1 + 30807 0.68 0.343514
Target:  5'- cGCCGucuGGCGCGCaaugucGCGCCGCgUcUGCa -3'
miRNA:   3'- -UGGCug-UCGCGCG------CGUGGCGgAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 7240 0.68 0.334805
Target:  5'- cACCGACAGgucgagauaccCGCGUuugcgcgccggcaGUACCGCCgugaugUCGUa -3'
miRNA:   3'- -UGGCUGUC-----------GCGCG-------------CGUGGCGGa-----AGCG- -5'
12127 3' -60.5 NC_003309.1 + 7412 0.68 0.327029
Target:  5'- cCCGGucuucuuCGGCGCGCGCuuACgCGCCU-CGUc -3'
miRNA:   3'- uGGCU-------GUCGCGCGCG--UG-GCGGAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 44184 0.68 0.320145
Target:  5'- cGCCcGCGGCGCGC-UGCCGCUcggCGUa -3'
miRNA:   3'- -UGGcUGUCGCGCGcGUGGCGGaa-GCG- -5'
12127 3' -60.5 NC_003309.1 + 7761 0.68 0.312625
Target:  5'- cGCCGGCgccuucgccGGUGCGaCGCcgagauACC-CCUUCGCa -3'
miRNA:   3'- -UGGCUG---------UCGCGC-GCG------UGGcGGAAGCG- -5'
12127 3' -60.5 NC_003309.1 + 10956 0.69 0.305239
Target:  5'- cCCGuAC-GCGCGaGCGCCGUCUgCGCc -3'
miRNA:   3'- uGGC-UGuCGCGCgCGUGGCGGAaGCG- -5'
12127 3' -60.5 NC_003309.1 + 31422 0.69 0.305239
Target:  5'- cGCUGGCGaccaGUGCGCAgCCGCCggCGUg -3'
miRNA:   3'- -UGGCUGUcg--CGCGCGU-GGCGGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.