miRNA: 3'- aCGGcAGCuCUaucUGGCUGACGUCC- -5'
miRNA: 3'- aCGGCAGCU------------CUAuCUGGCUGACGUcc -5'
miRNA: 3'- aCGGCAGCU-CUaUCUGGC-UG-ACGUC-C- -5'
miRNA: 3'- -ACGGCAGCUCUAUCUGGCUGACGUCC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12128 | 3' | -54.5 | NC_003309.1 | + | 25246 | 0.67 | 0.690596 |
|
Target: 5'- gGCCcUCGuGAc--AUCGACUGCGGGa -3' miRNA: 3'- aCGGcAGCuCUaucUGGCUGACGUCC- -5' |
|||||||
| 12128 | 3' | -54.5 | NC_003309.1 | + | 34510 | 0.71 | 0.475043 |
|
Target: 5'- gGCCGUCGAaucgauugcgccGAU-GAUCGGCUGCAc- -3' miRNA: 3'- aCGGCAGCU------------CUAuCUGGCUGACGUcc -5' |
|||||||
| 12128 | 3' | -54.5 | NC_003309.1 | + | 9420 | 0.73 | 0.379757 |
|
Target: 5'- gGCCGUCGAcGAgAGACCGcGCaUGCGGcGg -3' miRNA: 3'- aCGGCAGCU-CUaUCUGGC-UG-ACGUC-C- -5' |
|||||||
| 12128 | 3' | -54.5 | NC_003309.1 | + | 17369 | 1.1 | 0.001092 |
|
Target: 5'- gUGCCGUCGAGAUAGACCGACUGCAGGc -3' miRNA: 3'- -ACGGCAGCUCUAUCUGGCUGACGUCC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home