Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12128 | 5' | -61.6 | NC_003309.1 | + | 17385 | 0.66 | 0.422706 |
Target: 5'- cGCgUUCugGAUCGGUgugCCGUCGAGAUa -3' miRNA: 3'- -CG-GGGugCUAGCCGg--GGCGGCUCUAg -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 13254 | 0.66 | 0.404807 |
Target: 5'- cGCCCU-CGAUCGaaacuggcGCgCUGaCCGAGAUCc -3' miRNA: 3'- -CGGGGuGCUAGC--------CGgGGC-GGCUCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 20635 | 0.66 | 0.404807 |
Target: 5'- uGCCCagaACGGUU--CCCCGCgcgaGAGAUCu -3' miRNA: 3'- -CGGGg--UGCUAGccGGGGCGg---CUCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 39847 | 0.66 | 0.404807 |
Target: 5'- gGCCCUGCuGAUCcucuGGCUcgUCGUCGAGGUUa -3' miRNA: 3'- -CGGGGUG-CUAG----CCGG--GGCGGCUCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 10930 | 0.67 | 0.330452 |
Target: 5'- cGUCgCCGCGcuuucaGUCGccgucuucaGCCCCGCCGcGGUCg -3' miRNA: 3'- -CGG-GGUGC------UAGC---------CGGGGCGGCuCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 15000 | 0.68 | 0.308008 |
Target: 5'- cGCCCCuuCGA-CGGCCCgcucuCGCCGAa--- -3' miRNA: 3'- -CGGGGu-GCUaGCCGGG-----GCGGCUcuag -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 14174 | 0.69 | 0.266658 |
Target: 5'- -aCCCACGGUCaGCUugCCGCCGAcGAccUCg -3' miRNA: 3'- cgGGGUGCUAGcCGG--GGCGGCU-CU--AG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 9201 | 0.7 | 0.207864 |
Target: 5'- cGCCCUGCGAcUGaaacGCCgCCGCCGcGAUCa -3' miRNA: 3'- -CGGGGUGCUaGC----CGG-GGCGGCuCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 7624 | 0.71 | 0.197539 |
Target: 5'- cGCCCC-C--UCGGCCUCGCCGA--UCg -3' miRNA: 3'- -CGGGGuGcuAGCCGGGGCGGCUcuAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 19649 | 0.73 | 0.130019 |
Target: 5'- uGCCCCugcACGccCGGCCCCuucGCCGGGAa- -3' miRNA: 3'- -CGGGG---UGCuaGCCGGGG---CGGCUCUag -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 16827 | 0.74 | 0.120002 |
Target: 5'- cGCCCCAcCGGaugcucgagcUCGuCCUCGCCGAGAUUg -3' miRNA: 3'- -CGGGGU-GCU----------AGCcGGGGCGGCUCUAG- -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 11759 | 0.76 | 0.089117 |
Target: 5'- cGCCCgGCGAUCaGCCCCGCCa----- -3' miRNA: 3'- -CGGGgUGCUAGcCGGGGCGGcucuag -5' |
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12128 | 5' | -61.6 | NC_003309.1 | + | 17333 | 1.11 | 0.000183 |
Target: 5'- aGCCCCACGAUCGGCCCCGCCGAGAUCa -3' miRNA: 3'- -CGGGGUGCUAGCCGGGGCGGCUCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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