miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12128 5' -61.6 NC_003309.1 + 17385 0.66 0.422706
Target:  5'- cGCgUUCugGAUCGGUgugCCGUCGAGAUa -3'
miRNA:   3'- -CG-GGGugCUAGCCGg--GGCGGCUCUAg -5'
12128 5' -61.6 NC_003309.1 + 13254 0.66 0.404807
Target:  5'- cGCCCU-CGAUCGaaacuggcGCgCUGaCCGAGAUCc -3'
miRNA:   3'- -CGGGGuGCUAGC--------CGgGGC-GGCUCUAG- -5'
12128 5' -61.6 NC_003309.1 + 20635 0.66 0.404807
Target:  5'- uGCCCagaACGGUU--CCCCGCgcgaGAGAUCu -3'
miRNA:   3'- -CGGGg--UGCUAGccGGGGCGg---CUCUAG- -5'
12128 5' -61.6 NC_003309.1 + 39847 0.66 0.404807
Target:  5'- gGCCCUGCuGAUCcucuGGCUcgUCGUCGAGGUUa -3'
miRNA:   3'- -CGGGGUG-CUAG----CCGG--GGCGGCUCUAG- -5'
12128 5' -61.6 NC_003309.1 + 10930 0.67 0.330452
Target:  5'- cGUCgCCGCGcuuucaGUCGccgucuucaGCCCCGCCGcGGUCg -3'
miRNA:   3'- -CGG-GGUGC------UAGC---------CGGGGCGGCuCUAG- -5'
12128 5' -61.6 NC_003309.1 + 15000 0.68 0.308008
Target:  5'- cGCCCCuuCGA-CGGCCCgcucuCGCCGAa--- -3'
miRNA:   3'- -CGGGGu-GCUaGCCGGG-----GCGGCUcuag -5'
12128 5' -61.6 NC_003309.1 + 14174 0.69 0.266658
Target:  5'- -aCCCACGGUCaGCUugCCGCCGAcGAccUCg -3'
miRNA:   3'- cgGGGUGCUAGcCGG--GGCGGCU-CU--AG- -5'
12128 5' -61.6 NC_003309.1 + 9201 0.7 0.207864
Target:  5'- cGCCCUGCGAcUGaaacGCCgCCGCCGcGAUCa -3'
miRNA:   3'- -CGGGGUGCUaGC----CGG-GGCGGCuCUAG- -5'
12128 5' -61.6 NC_003309.1 + 7624 0.71 0.197539
Target:  5'- cGCCCC-C--UCGGCCUCGCCGA--UCg -3'
miRNA:   3'- -CGGGGuGcuAGCCGGGGCGGCUcuAG- -5'
12128 5' -61.6 NC_003309.1 + 19649 0.73 0.130019
Target:  5'- uGCCCCugcACGccCGGCCCCuucGCCGGGAa- -3'
miRNA:   3'- -CGGGG---UGCuaGCCGGGG---CGGCUCUag -5'
12128 5' -61.6 NC_003309.1 + 16827 0.74 0.120002
Target:  5'- cGCCCCAcCGGaugcucgagcUCGuCCUCGCCGAGAUUg -3'
miRNA:   3'- -CGGGGU-GCU----------AGCcGGGGCGGCUCUAG- -5'
12128 5' -61.6 NC_003309.1 + 11759 0.76 0.089117
Target:  5'- cGCCCgGCGAUCaGCCCCGCCa----- -3'
miRNA:   3'- -CGGGgUGCUAGcCGGGGCGGcucuag -5'
12128 5' -61.6 NC_003309.1 + 17333 1.11 0.000183
Target:  5'- aGCCCCACGAUCGGCCCCGCCGAGAUCa -3'
miRNA:   3'- -CGGGGUGCUAGCCGGGGCGGCUCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.