Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12129 | 3' | -56.2 | NC_003309.1 | + | 17681 | 1.14 | 0.000362 |
Target: 5'- gGCCAGCACCUGCGUAUACGACCCGCCg -3' miRNA: 3'- -CGGUCGUGGACGCAUAUGCUGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 12667 | 0.77 | 0.154344 |
Target: 5'- cGCCAGUcgGCCUGCa-AUGCGAgCCGCUg -3' miRNA: 3'- -CGGUCG--UGGACGcaUAUGCUgGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 18713 | 0.77 | 0.167433 |
Target: 5'- cGCCGGCugCgGCGcggAUACGG-CCGCCg -3' miRNA: 3'- -CGGUCGugGaCGCa--UAUGCUgGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 25848 | 0.75 | 0.224247 |
Target: 5'- aCCGGCGCgaGCGggAUACGcaucuuuCCCGCCa -3' miRNA: 3'- cGGUCGUGgaCGCa-UAUGCu------GGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 19967 | 0.75 | 0.230154 |
Target: 5'- uGCU-GCGCCUGCGc--GCGAUCCGCUu -3' miRNA: 3'- -CGGuCGUGGACGCauaUGCUGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 18544 | 0.75 | 0.230154 |
Target: 5'- cGCCuGCGCCUGCGacGUGCaGCCgaaCGCCg -3' miRNA: 3'- -CGGuCGUGGACGCa-UAUGcUGG---GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 20175 | 0.73 | 0.289355 |
Target: 5'- cGCCgacacgAGCACCUGCG-AUuCGACgaCGCCg -3' miRNA: 3'- -CGG------UCGUGGACGCaUAuGCUGg-GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 7761 | 0.72 | 0.311587 |
Target: 5'- cGCCGGCGCCUuCGccgGUGCGACgCCGa- -3' miRNA: 3'- -CGGUCGUGGAcGCa--UAUGCUG-GGCgg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 30269 | 0.71 | 0.359867 |
Target: 5'- aGCaCGGCGCCUG-GUAUugGAgCgaGCCa -3' miRNA: 3'- -CG-GUCGUGGACgCAUAugCUgGg-CGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 5397 | 0.71 | 0.359867 |
Target: 5'- uGUCAGCACCgaUGUAgccgACGAUCgCGCCa -3' miRNA: 3'- -CGGUCGUGGacGCAUa---UGCUGG-GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 43418 | 0.71 | 0.392142 |
Target: 5'- -aCAGCACCugUGCGUGcuggaagaucgcgcUuCGACCCGCa -3' miRNA: 3'- cgGUCGUGG--ACGCAU--------------AuGCUGGGCGg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 31478 | 0.7 | 0.422471 |
Target: 5'- cGCCGGCGgCgaaaGCGgccACGgcGCCCGCCc -3' miRNA: 3'- -CGGUCGUgGa---CGCauaUGC--UGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 10866 | 0.7 | 0.422471 |
Target: 5'- cGCuCGcGCGCCUGCGUGgcaagcGCGACaucaCGCUc -3' miRNA: 3'- -CG-GU-CGUGGACGCAUa-----UGCUGg---GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 5235 | 0.7 | 0.430984 |
Target: 5'- cGCCAGCACCcgGCGaaaggGUguuaagcgacaucGCGACUucuuCGCCg -3' miRNA: 3'- -CGGUCGUGGa-CGCa----UA-------------UGCUGG----GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 9470 | 0.7 | 0.431936 |
Target: 5'- cGCC-GCAUC-GC-UGUGCG-CCCGCCg -3' miRNA: 3'- -CGGuCGUGGaCGcAUAUGCuGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 4877 | 0.69 | 0.469992 |
Target: 5'- uGCCAGCGCUUGC-------ACCCGCUg -3' miRNA: 3'- -CGGUCGUGGACGcauaugcUGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 8831 | 0.69 | 0.490159 |
Target: 5'- aGCCGcGCauucGCUUGCGUGUGCGcgucgucGCUCGCa -3' miRNA: 3'- -CGGU-CG----UGGACGCAUAUGC-------UGGGCGg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 46656 | 0.69 | 0.501422 |
Target: 5'- gGCCGGCGCguaaUGCGca-GCGcACCgGCCu -3' miRNA: 3'- -CGGUCGUGg---ACGCauaUGC-UGGgCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 1359 | 0.68 | 0.522182 |
Target: 5'- uGCCGGCGCUUGuCGaagcACGGCCCcucgauguucgcGCCc -3' miRNA: 3'- -CGGUCGUGGAC-GCaua-UGCUGGG------------CGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 16383 | 0.68 | 0.529527 |
Target: 5'- aCCGGCGuCCUGauaGUGguugagguagagguuCGAUCCGCCg -3' miRNA: 3'- cGGUCGU-GGACg--CAUau-------------GCUGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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