Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12129 | 3' | -56.2 | NC_003309.1 | + | 18801 | 0.66 | 0.651527 |
Target: 5'- aCCcGCGCCUGCGcgaugcccgACGGCaagauCGCCg -3' miRNA: 3'- cGGuCGUGGACGCaua------UGCUGg----GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 19345 | 0.68 | 0.532687 |
Target: 5'- cCCGGuCAgCUGCGUAU-CGACgccauaCGCCg -3' miRNA: 3'- cGGUC-GUgGACGCAUAuGCUGg-----GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 19807 | 0.66 | 0.640626 |
Target: 5'- cGCCGGCAUUgaGCGUcu-CGucGCCCGCg -3' miRNA: 3'- -CGGUCGUGGa-CGCAuauGC--UGGGCGg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 19967 | 0.75 | 0.230154 |
Target: 5'- uGCU-GCGCCUGCGc--GCGAUCCGCUu -3' miRNA: 3'- -CGGuCGUGGACGCauaUGCUGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 20175 | 0.73 | 0.289355 |
Target: 5'- cGCCgacacgAGCACCUGCG-AUuCGACgaCGCCg -3' miRNA: 3'- -CGG------UCGUGGACGCaUAuGCUGg-GCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 20281 | 0.66 | 0.640626 |
Target: 5'- aGCCcGCACCgaucaGCGccugACGcaagaacaccuGCCCGCCc -3' miRNA: 3'- -CGGuCGUGGa----CGCaua-UGC-----------UGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 20766 | 0.67 | 0.586193 |
Target: 5'- cCCGGCACCgGCGUu--CGAUugCUGCUa -3' miRNA: 3'- cGGUCGUGGaCGCAuauGCUG--GGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 25848 | 0.75 | 0.224247 |
Target: 5'- aCCGGCGCgaGCGggAUACGcaucuuuCCCGCCa -3' miRNA: 3'- cGGUCGUGgaCGCa-UAUGCu------GGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 27166 | 0.66 | 0.673268 |
Target: 5'- aCCGGCgcGCCgGCGUugacCGugCCGCg -3' miRNA: 3'- cGGUCG--UGGaCGCAuau-GCugGGCGg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 28605 | 0.67 | 0.575385 |
Target: 5'- cGCCAGaucCCUGCaacacaAUACGG-CCGCCa -3' miRNA: 3'- -CGGUCgu-GGACGca----UAUGCUgGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 29971 | 0.66 | 0.662411 |
Target: 5'- cGCCGGCAagCUGCaUAUGCaACgCGUCa -3' miRNA: 3'- -CGGUCGUg-GACGcAUAUGcUGgGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 30269 | 0.71 | 0.359867 |
Target: 5'- aGCaCGGCGCCUG-GUAUugGAgCgaGCCa -3' miRNA: 3'- -CG-GUCGUGGACgCAUAugCUgGg-CGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 31478 | 0.7 | 0.422471 |
Target: 5'- cGCCGGCGgCgaaaGCGgccACGgcGCCCGCCc -3' miRNA: 3'- -CGGUCGUgGa---CGCauaUGC--UGGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 36770 | 0.66 | 0.684086 |
Target: 5'- cGCuCGGCGgUgGCG-GUugGGuCCCGCCa -3' miRNA: 3'- -CG-GUCGUgGaCGCaUAugCU-GGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 43418 | 0.71 | 0.392142 |
Target: 5'- -aCAGCACCugUGCGUGcuggaagaucgcgcUuCGACCCGCa -3' miRNA: 3'- cgGUCGUGG--ACGCAU--------------AuGCUGGGCGg -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 45758 | 0.68 | 0.564623 |
Target: 5'- uUCGGCGCCUGa-UGUACGcGCCgGUCg -3' miRNA: 3'- cGGUCGUGGACgcAUAUGC-UGGgCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 46362 | 0.68 | 0.553914 |
Target: 5'- cGCgAGCGCCgccucgaucUGCuuacgcggacGUAcGCGugCCGCCg -3' miRNA: 3'- -CGgUCGUGG---------ACG----------CAUaUGCugGGCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 46656 | 0.69 | 0.501422 |
Target: 5'- gGCCGGCGCguaaUGCGca-GCGcACCgGCCu -3' miRNA: 3'- -CGGUCGUGg---ACGCauaUGC-UGGgCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 48472 | 0.67 | 0.629716 |
Target: 5'- cGUCAGC-CC-GCG---GCGGCCgGCCu -3' miRNA: 3'- -CGGUCGuGGaCGCauaUGCUGGgCGG- -5' |
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12129 | 3' | -56.2 | NC_003309.1 | + | 51062 | 0.67 | 0.618809 |
Target: 5'- ---cGCACUgGCGUcaACG-CCCGCCa -3' miRNA: 3'- cgguCGUGGaCGCAuaUGCuGGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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