miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12130 3' -54.5 NC_003309.1 + 915 0.68 0.63909
Target:  5'- cGAaACcGGCGCuuGCCGGUGCGCUUGu -3'
miRNA:   3'- aCUaUGcUUGCG--UGGCCGUGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 3318 0.66 0.778194
Target:  5'- cGAUGuCGAGCGCGgaaaGGCgcaGCGCgUCGAu -3'
miRNA:   3'- aCUAU-GCUUGCGUgg--CCG---UGCG-AGCU- -5'
12130 3' -54.5 NC_003309.1 + 4174 0.77 0.191927
Target:  5'- gGAUGucguccgccagcuCGAACGCGCCGGuCGCGCUCc- -3'
miRNA:   3'- aCUAU-------------GCUUGCGUGGCC-GUGCGAGcu -5'
12130 3' -54.5 NC_003309.1 + 7227 0.67 0.672158
Target:  5'- aGAUacccGCGuuuGCGCGCCGGCAguacCGCcgUGAu -3'
miRNA:   3'- aCUA----UGCu--UGCGUGGCCGU----GCGa-GCU- -5'
12130 3' -54.5 NC_003309.1 + 9516 0.69 0.594952
Target:  5'- cGA-GCGcGCGCACCGugaccuGCACGCUUGc -3'
miRNA:   3'- aCUaUGCuUGCGUGGC------CGUGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 10331 0.66 0.726361
Target:  5'- ---gACGAGCGCucGCCGG-GCGC-CGAc -3'
miRNA:   3'- acuaUGCUUGCG--UGGCCgUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 10634 0.72 0.399026
Target:  5'- cGAUGCGcGCGCcgauuuccugacuGCCGGCaACGUUCGc -3'
miRNA:   3'- aCUAUGCuUGCG-------------UGGCCG-UGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 10723 0.81 0.120386
Target:  5'- ---cGCGAGCGCGagcgaagccUCGGCGCGCUCGAg -3'
miRNA:   3'- acuaUGCUUGCGU---------GGCCGUGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 11505 0.74 0.318047
Target:  5'- cGAcGCGAGgcucgccgugucgauCGCGCCGGCG-GCUCGAa -3'
miRNA:   3'- aCUaUGCUU---------------GCGUGGCCGUgCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 11782 0.67 0.68312
Target:  5'- cGA-GCGAcuuguACGCGUCGGCGCGCcCGGc -3'
miRNA:   3'- aCUaUGCU-----UGCGUGGCCGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 16005 0.76 0.237995
Target:  5'- gGAUGCGAGCGCGaauugguccgUCGGCGCgGCUgCGAg -3'
miRNA:   3'- aCUAUGCUUGCGU----------GGCCGUG-CGA-GCU- -5'
12130 3' -54.5 NC_003309.1 + 16843 0.66 0.74746
Target:  5'- -aAUGCGAaucucgucGCGCcccACCGG-AUGCUCGAg -3'
miRNA:   3'- acUAUGCU--------UGCG---UGGCCgUGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 17120 0.67 0.67106
Target:  5'- cGAUAaCGAGCgGCACCGGUucgcccuGCGC-CGc -3'
miRNA:   3'- aCUAU-GCUUG-CGUGGCCG-------UGCGaGCu -5'
12130 3' -54.5 NC_003309.1 + 17500 0.71 0.477674
Target:  5'- ---aGCGGcACGCcgacGCCGGCcucACGCUCGAc -3'
miRNA:   3'- acuaUGCU-UGCG----UGGCCG---UGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 17591 0.71 0.447609
Target:  5'- cUGAcGCuguaGCGCCGGCACGC-CGAa -3'
miRNA:   3'- -ACUaUGcuugCGUGGCCGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 17694 0.67 0.703801
Target:  5'- cGu--CGAACGCACCGGCcagcaccuGCGUauacgacccgccgUCGAc -3'
miRNA:   3'- aCuauGCUUGCGUGGCCG--------UGCG-------------AGCU- -5'
12130 3' -54.5 NC_003309.1 + 17936 1.09 0.001148
Target:  5'- gUGAUACGAACGCACCGGCACGCUCGAg -3'
miRNA:   3'- -ACUAUGCUUGCGUGGCCGUGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 18416 0.66 0.778194
Target:  5'- ---gACGAGCGCgACCGuGUagcgcgucuuGCGCUCGc -3'
miRNA:   3'- acuaUGCUUGCG-UGGC-CG----------UGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 25863 0.68 0.616994
Target:  5'- gGGgcgcCGAACaGCACCGGCGCGagCGGg -3'
miRNA:   3'- aCUau--GCUUG-CGUGGCCGUGCgaGCU- -5'
12130 3' -54.5 NC_003309.1 + 27186 0.67 0.67106
Target:  5'- uUGAUuCGcGCGUguuguagACCGGCGCGC-CGGc -3'
miRNA:   3'- -ACUAuGCuUGCG-------UGGCCGUGCGaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.