miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12130 3' -54.5 NC_003309.1 + 33080 0.68 0.661159
Target:  5'- ---gAUGGGCGCAUCcuucGCGCGUUCGAu -3'
miRNA:   3'- acuaUGCUUGCGUGGc---CGUGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 42660 0.68 0.654546
Target:  5'- ---aGCGAACGgGCCGGCGauggcguccugucguCGUUUGAa -3'
miRNA:   3'- acuaUGCUUGCgUGGCCGU---------------GCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 37303 0.68 0.650133
Target:  5'- -cGUGCGcGACGCccugaaucucGCCGGCGCG-UCGAu -3'
miRNA:   3'- acUAUGC-UUGCG----------UGGCCGUGCgAGCU- -5'
12130 3' -54.5 NC_003309.1 + 46122 0.68 0.650133
Target:  5'- ---aGCaGAGCGCACgguCGGCAC-CUCGAc -3'
miRNA:   3'- acuaUG-CUUGCGUG---GCCGUGcGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 915 0.68 0.63909
Target:  5'- cGAaACcGGCGCuuGCCGGUGCGCUUGu -3'
miRNA:   3'- aCUaUGcUUGCG--UGGCCGUGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 25863 0.68 0.616994
Target:  5'- gGGgcgcCGAACaGCACCGGCGCGagCGGg -3'
miRNA:   3'- aCUau--GCUUG-CGUGGCCGUGCgaGCU- -5'
12130 3' -54.5 NC_003309.1 + 33954 0.68 0.605962
Target:  5'- cGAUGUGAcCGCGCCGcGCcCGCUgGAc -3'
miRNA:   3'- aCUAUGCUuGCGUGGC-CGuGCGAgCU- -5'
12130 3' -54.5 NC_003309.1 + 9516 0.69 0.594952
Target:  5'- cGA-GCGcGCGCACCGugaccuGCACGCUUGc -3'
miRNA:   3'- aCUaUGCuUGCGUGGC------CGUGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 43791 0.69 0.562148
Target:  5'- ---cGCGAGCGCGcCCGGCaaacgucucuccGCGCaUCGGc -3'
miRNA:   3'- acuaUGCUUGCGU-GGCCG------------UGCG-AGCU- -5'
12130 3' -54.5 NC_003309.1 + 46645 0.7 0.508702
Target:  5'- -aAUGCGcAGCGCACCGGCcuccuccaACGUgCGAa -3'
miRNA:   3'- acUAUGC-UUGCGUGGCCG--------UGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 17500 0.71 0.477674
Target:  5'- ---aGCGGcACGCcgacGCCGGCcucACGCUCGAc -3'
miRNA:   3'- acuaUGCU-UGCG----UGGCCG---UGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 17591 0.71 0.447609
Target:  5'- cUGAcGCuguaGCGCCGGCACGC-CGAa -3'
miRNA:   3'- -ACUaUGcuugCGUGGCCGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 47969 0.71 0.447609
Target:  5'- -cGUGCG-GCGCGCCaGCucGCGCUCGGc -3'
miRNA:   3'- acUAUGCuUGCGUGGcCG--UGCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 10634 0.72 0.399026
Target:  5'- cGAUGCGcGCGCcgauuuccugacuGCCGGCaACGUUCGc -3'
miRNA:   3'- aCUAUGCuUGCG-------------UGGCCG-UGCGAGCu -5'
12130 3' -54.5 NC_003309.1 + 40504 0.72 0.390808
Target:  5'- cGAUGCGGACGUgguCUGGC-CGCggCGAg -3'
miRNA:   3'- aCUAUGCUUGCGu--GGCCGuGCGa-GCU- -5'
12130 3' -54.5 NC_003309.1 + 11505 0.74 0.318047
Target:  5'- cGAcGCGAGgcucgccgugucgauCGCGCCGGCG-GCUCGAa -3'
miRNA:   3'- aCUaUGCUU---------------GCGUGGCCGUgCGAGCU- -5'
12130 3' -54.5 NC_003309.1 + 49477 0.75 0.27083
Target:  5'- ---gAUGAAUGCGCCGaGCACGCgCGAa -3'
miRNA:   3'- acuaUGCUUGCGUGGC-CGUGCGaGCU- -5'
12130 3' -54.5 NC_003309.1 + 16005 0.76 0.237995
Target:  5'- gGAUGCGAGCGCGaauugguccgUCGGCGCgGCUgCGAg -3'
miRNA:   3'- aCUAUGCUUGCGU----------GGCCGUG-CGA-GCU- -5'
12130 3' -54.5 NC_003309.1 + 4174 0.77 0.191927
Target:  5'- gGAUGucguccgccagcuCGAACGCGCCGGuCGCGCUCc- -3'
miRNA:   3'- aCUAU-------------GCUUGCGUGGCC-GUGCGAGcu -5'
12130 3' -54.5 NC_003309.1 + 10723 0.81 0.120386
Target:  5'- ---cGCGAGCGCGagcgaagccUCGGCGCGCUCGAg -3'
miRNA:   3'- acuaUGCUUGCGU---------GGCCGUGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.