Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 12130 | 5' | -54.9 | NC_003309.1 | + | 554 | 0.66 | 0.772588 |
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Target: 5'- uGUCGggUGUUuucggcuuugcGCCGACcaGGCGCUg -3' miRNA: 3'- gCAGCuuGCAGua---------CGGCUGc-UCGCGG- -5' |
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| 12130 | 5' | -54.9 | NC_003309.1 | + | 5149 | 0.66 | 0.764576 |
|
Target: 5'- gCGUCGccGCG-CGccGCCG-CGAGCGCa -3' miRNA: 3'- -GCAGCu-UGCaGUa-CGGCuGCUCGCGg -5' |
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| 12130 | 5' | -54.9 | NC_003309.1 | + | 45736 | 0.66 | 0.764576 |
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Target: 5'- gGUCGuacAGCGg-GUGCUucggguccguGACGAGCGUCa -3' miRNA: 3'- gCAGC---UUGCagUACGG----------CUGCUCGCGG- -5' |
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| 12130 | 5' | -54.9 | NC_003309.1 | + | 16935 | 0.66 | 0.754441 |
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Target: 5'- --cCGAACGUCGcgaucgcGCCGACaGcgacgagugcGGCGCCg -3' miRNA: 3'- gcaGCUUGCAGUa------CGGCUG-C----------UCGCGG- -5' |
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| 12130 | 5' | -54.9 | NC_003309.1 | + | 34524 | 0.66 | 0.743153 |
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Target: 5'- cCGUCG-AUGUgGgcgGCCGuCGAaucgauuGCGCCg -3' miRNA: 3'- -GCAGCuUGCAgUa--CGGCuGCU-------CGCGG- -5' |
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| 12130 | 5' | -54.9 | NC_003309.1 | + | 10652 | 0.66 | 0.784435 |
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Target: 5'- cCG-CGuACGgCAUGCCcGCGAugcgcGCGCCg -3' miRNA: 3'- -GCaGCuUGCaGUACGGcUGCU-----CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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