miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12133 3' -47.8 NC_003309.1 + 165 0.66 0.98554
Target:  5'- cCGCGAUuuuccgCGCCGUCGGCuuggGUUUUCu--- -3'
miRNA:   3'- -GCGCUA------GUGGUAGCUG----CAAAAGcuuu -5'
12133 3' -47.8 NC_003309.1 + 14348 0.66 0.983506
Target:  5'- aGCGAcuacuUCGCCGUUGACG----CGAAAc -3'
miRNA:   3'- gCGCU-----AGUGGUAGCUGCaaaaGCUUU- -5'
12133 3' -47.8 NC_003309.1 + 35722 0.66 0.983506
Target:  5'- aCGCGaAUCGCUcuUCGACGgcUUCGu-- -3'
miRNA:   3'- -GCGC-UAGUGGu-AGCUGCaaAAGCuuu -5'
12133 3' -47.8 NC_003309.1 + 51566 0.66 0.978797
Target:  5'- cCGCGAUUGCC-UCGGCaac-UCGAAGc -3'
miRNA:   3'- -GCGCUAGUGGuAGCUGcaaaAGCUUU- -5'
12133 3' -47.8 NC_003309.1 + 9513 0.67 0.972228
Target:  5'- gCGCGcgCACCGUgaccugcacgcuugCGGCGU--UCGAGg -3'
miRNA:   3'- -GCGCuaGUGGUA--------------GCUGCAaaAGCUUu -5'
12133 3' -47.8 NC_003309.1 + 34533 0.68 0.945008
Target:  5'- aGCGAgCAcCCGUCGAUGUgggcggccgUCGAAu -3'
miRNA:   3'- gCGCUaGU-GGUAGCUGCAaa-------AGCUUu -5'
12133 3' -47.8 NC_003309.1 + 23050 0.68 0.945008
Target:  5'- cCGCGAaCACC-UCGACGUaacagucgugcUUCGGAAa -3'
miRNA:   3'- -GCGCUaGUGGuAGCUGCAa----------AAGCUUU- -5'
12133 3' -47.8 NC_003309.1 + 11970 0.68 0.939822
Target:  5'- gGCGcgCGCCgcGUCGGCGUUgaagcCGAAc -3'
miRNA:   3'- gCGCuaGUGG--UAGCUGCAAaa---GCUUu -5'
12133 3' -47.8 NC_003309.1 + 14802 0.69 0.928531
Target:  5'- cCGCGcagccgCGCCAUU-ACGUUUUCGAGu -3'
miRNA:   3'- -GCGCua----GUGGUAGcUGCAAAAGCUUu -5'
12133 3' -47.8 NC_003309.1 + 18485 0.69 0.922424
Target:  5'- gCGCGAUC-CCGUCGucguccugcACGgcUUCGAc- -3'
miRNA:   3'- -GCGCUAGuGGUAGC---------UGCaaAAGCUuu -5'
12133 3' -47.8 NC_003309.1 + 50058 0.7 0.902267
Target:  5'- gCGCGAUCACCGcccaucgcUCGACGUccaUCa--- -3'
miRNA:   3'- -GCGCUAGUGGU--------AGCUGCAaa-AGcuuu -5'
12133 3' -47.8 NC_003309.1 + 35030 0.7 0.887323
Target:  5'- uGCGA-CGCCGaCGACGUgaUCGAu- -3'
miRNA:   3'- gCGCUaGUGGUaGCUGCAaaAGCUuu -5'
12133 3' -47.8 NC_003309.1 + 28679 0.7 0.879413
Target:  5'- uGgGAUCGCCcUCGGCGUUgaCGGu- -3'
miRNA:   3'- gCgCUAGUGGuAGCUGCAAaaGCUuu -5'
12133 3' -47.8 NC_003309.1 + 37031 0.73 0.77571
Target:  5'- uCGCGAUCGCCAagGGCGaggcCGAAGc -3'
miRNA:   3'- -GCGCUAGUGGUagCUGCaaaaGCUUU- -5'
12133 3' -47.8 NC_003309.1 + 19142 1.08 0.00741
Target:  5'- aCGCGAUCACCAUCGACGUUUUCGAAAu -3'
miRNA:   3'- -GCGCUAGUGGUAGCUGCAAAAGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.