miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12134 5' -56.9 NC_003309.1 + 31480 0.66 0.63108
Target:  5'- aUCgCCGG-CGGCgaaaGCGgccaCGGCGCCc -3'
miRNA:   3'- aAG-GGCCaGUCGa---CGCaua-GCUGCGG- -5'
12134 5' -56.9 NC_003309.1 + 17684 0.69 0.432488
Target:  5'- --aCCGGcCAGCaccUGCGUAUaCGAccCGCCg -3'
miRNA:   3'- aagGGCCaGUCG---ACGCAUA-GCU--GCGG- -5'
12134 5' -56.9 NC_003309.1 + 17554 0.75 0.196333
Target:  5'- -aCCgCGGUCAGUUGCGUAUucuggaucUGGCGCa -3'
miRNA:   3'- aaGG-GCCAGUCGACGCAUA--------GCUGCGg -5'
12134 5' -56.9 NC_003309.1 + 19348 1.1 0.000551
Target:  5'- uUUCCCGGUCAGCUGCGUAUCGACGCCa -3'
miRNA:   3'- -AAGGGCCAGUCGACGCAUAGCUGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.