miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12137 3' -51.3 NC_003309.1 + 18381 0.66 0.924195
Target:  5'- uGCCGacguacuUGAauGAAccGCCGACGAcguUCGCgGCCg -3'
miRNA:   3'- -CGGC-------ACU--CUUa-UGGCUGCU---AGUG-CGG- -5'
12137 3' -51.3 NC_003309.1 + 1001 0.66 0.918744
Target:  5'- cGUCGUcGAGGAcgaacaugccgaUGCCGACGccCGCGgCg -3'
miRNA:   3'- -CGGCA-CUCUU------------AUGGCUGCuaGUGCgG- -5'
12137 3' -51.3 NC_003309.1 + 48036 0.66 0.918744
Target:  5'- cGgCGUGaAGAGUgGCCGGuCGAgguCGCCg -3'
miRNA:   3'- -CgGCAC-UCUUA-UGGCU-GCUaguGCGG- -5'
12137 3' -51.3 NC_003309.1 + 31727 0.66 0.912419
Target:  5'- -gCGUGAGug-GCCGugGccgcauGUCugGCUc -3'
miRNA:   3'- cgGCACUCuuaUGGCugC------UAGugCGG- -5'
12137 3' -51.3 NC_003309.1 + 17903 0.67 0.898928
Target:  5'- -aCGUGcgucGAacgucAUGCCGACGA--GCGCCg -3'
miRNA:   3'- cgGCACu---CU-----UAUGGCUGCUagUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 15237 0.67 0.898928
Target:  5'- cGUCGacUGAaGAUGCCGAUGAaaGCGCa -3'
miRNA:   3'- -CGGC--ACUcUUAUGGCUGCUagUGCGg -5'
12137 3' -51.3 NC_003309.1 + 12849 0.67 0.898928
Target:  5'- aCCGcgcGAGG---UCGGCGAUCAUGCUg -3'
miRNA:   3'- cGGCa--CUCUuauGGCUGCUAGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 14192 0.67 0.891768
Target:  5'- cGCCGcgaaGAGAucgcUACCcACGGUCAgcuUGCCg -3'
miRNA:   3'- -CGGCa---CUCUu---AUGGcUGCUAGU---GCGG- -5'
12137 3' -51.3 NC_003309.1 + 24443 0.67 0.868687
Target:  5'- cCCGUGAcgcggcGGAUAUCGGCGcUCAugagcaaaaccCGCCg -3'
miRNA:   3'- cGGCACU------CUUAUGGCUGCuAGU-----------GCGG- -5'
12137 3' -51.3 NC_003309.1 + 16077 0.67 0.867877
Target:  5'- uGCCGacgcccccggaUGcGAAUGCacgagagCGACGAUCuCGCCa -3'
miRNA:   3'- -CGGC-----------ACuCUUAUG-------GCUGCUAGuGCGG- -5'
12137 3' -51.3 NC_003309.1 + 34971 0.68 0.860479
Target:  5'- aGCUGcUGAuGGAUAuCCaGAC-AUCGCGCCg -3'
miRNA:   3'- -CGGC-ACU-CUUAU-GG-CUGcUAGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 44439 0.68 0.860479
Target:  5'- cCCGgccGAcUGCCGGCGAgCACGCa -3'
miRNA:   3'- cGGCacuCUuAUGGCUGCUaGUGCGg -5'
12137 3' -51.3 NC_003309.1 + 18976 0.68 0.860479
Target:  5'- uGUCGcguUGAucGUGuaGACGAUCugGCCg -3'
miRNA:   3'- -CGGC---ACUcuUAUggCUGCUAGugCGG- -5'
12137 3' -51.3 NC_003309.1 + 15840 0.68 0.860479
Target:  5'- cGCCGUGuGGcggguccucAUAUCGAaacuguuucgUGcAUCACGCCa -3'
miRNA:   3'- -CGGCACuCU---------UAUGGCU----------GC-UAGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 15470 0.68 0.843338
Target:  5'- cGCCGUcGGAuUGCCGGcCGGaaguUCACGgCg -3'
miRNA:   3'- -CGGCAcUCUuAUGGCU-GCU----AGUGCgG- -5'
12137 3' -51.3 NC_003309.1 + 16766 0.68 0.843338
Target:  5'- -aCGUGAGGccGCCGuCG--CGCGCCg -3'
miRNA:   3'- cgGCACUCUuaUGGCuGCuaGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 16947 0.69 0.806401
Target:  5'- gGCUGcGcGAA-ACCGaacgucGCGAUCGCGCCg -3'
miRNA:   3'- -CGGCaCuCUUaUGGC------UGCUAGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 40159 0.69 0.800585
Target:  5'- aGCCGUGAGAcgugggcgGUACucggccuaucucauCGGuacagcgagaacauCGGUCGCGCCc -3'
miRNA:   3'- -CGGCACUCU--------UAUG--------------GCU--------------GCUAGUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 18517 0.69 0.796672
Target:  5'- cGCCGUGAccu--CCGucuUGAUgACGCCg -3'
miRNA:   3'- -CGGCACUcuuauGGCu--GCUAgUGCGG- -5'
12137 3' -51.3 NC_003309.1 + 1196 0.69 0.796672
Target:  5'- cGCCGUcgccuGGGu-UGCCGAUGAUCGgcucaaaucggcUGCCg -3'
miRNA:   3'- -CGGCA-----CUCuuAUGGCUGCUAGU------------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.