Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12137 | 5' | -52.7 | NC_003309.1 | + | 21640 | 1.11 | 0.001431 |
Target: 5'- gUCAACGUAAGCGACGACGCGACCGACg -3' miRNA: 3'- -AGUUGCAUUCGCUGCUGCGCUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 4318 | 0.76 | 0.326152 |
Target: 5'- -gAugGUuGGCGAUGACGCcGAUCGACc -3' miRNA: 3'- agUugCAuUCGCUGCUGCG-CUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 3558 | 0.76 | 0.342517 |
Target: 5'- aCcGCGUAGGCGGCGuauCGCGA-CGACu -3' miRNA: 3'- aGuUGCAUUCGCUGCu--GCGCUgGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 35029 | 0.72 | 0.503814 |
Target: 5'- gCGACGc---CGACGACGUGAUCGAUa -3' miRNA: 3'- aGUUGCauucGCUGCUGCGCUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 11779 | 0.71 | 0.557392 |
Target: 5'- gCGACuuGUAcGCGuCGGCGCGcCCGGCg -3' miRNA: 3'- aGUUG--CAUuCGCuGCUGCGCuGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 22490 | 0.68 | 0.743895 |
Target: 5'- gUCGACGgcGGCcaccgcCGACGCGG-CGGCa -3' miRNA: 3'- -AGUUGCauUCGcu----GCUGCGCUgGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 22679 | 0.68 | 0.754374 |
Target: 5'- gUCGACGUcugcauAGGCGGCGGCaccaucGCccacGCCGGCg -3' miRNA: 3'- -AGUUGCA------UUCGCUGCUG------CGc---UGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 36560 | 0.68 | 0.774939 |
Target: 5'- aCAuCGUc-GCGGcCGGCGCGAUCGAg -3' miRNA: 3'- aGUuGCAuuCGCU-GCUGCGCUGGCUg -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 34522 | 0.68 | 0.774939 |
Target: 5'- gUCGAUGUGGGCGGCcgucgaaucGAUuGCG-CCGAUg -3' miRNA: 3'- -AGUUGCAUUCGCUG---------CUG-CGCuGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 16768 | 0.68 | 0.774939 |
Target: 5'- -gAACGUGAGgcCGcCGuCGCGcGCCGACg -3' miRNA: 3'- agUUGCAUUC--GCuGCuGCGC-UGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 22462 | 0.67 | 0.785001 |
Target: 5'- nCAuCGUGcGCGGCGAucgcaCGCuGCCGGCg -3' miRNA: 3'- aGUuGCAUuCGCUGCU-----GCGcUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 46101 | 0.67 | 0.788982 |
Target: 5'- cUCGACaccgAAcGCGACGGCgauagcauccucgguGUGGCCGACg -3' miRNA: 3'- -AGUUGca--UU-CGCUGCUG---------------CGCUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 16414 | 0.67 | 0.80463 |
Target: 5'- gCAACGUc----ACGuCGCGGCCGACg -3' miRNA: 3'- aGUUGCAuucgcUGCuGCGCUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 18311 | 0.67 | 0.80463 |
Target: 5'- aUCGGCcgacGCGACGACGgaGCCGGCc -3' miRNA: 3'- -AGUUGcauuCGCUGCUGCgcUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 31729 | 0.67 | 0.80463 |
Target: 5'- -gAGCGUGAGUGGC--CGUGGCCG-Ca -3' miRNA: 3'- agUUGCAUUCGCUGcuGCGCUGGCuG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 41457 | 0.67 | 0.814173 |
Target: 5'- cUAACcUGcGCGAUGGCGCaagggacucccaGACCGGCa -3' miRNA: 3'- aGUUGcAUuCGCUGCUGCG------------CUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 3420 | 0.67 | 0.814173 |
Target: 5'- aCAGCGUGuAGaUGACGAacuggaGCGACUGGu -3' miRNA: 3'- aGUUGCAU-UC-GCUGCUg-----CGCUGGCUg -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 2279 | 0.66 | 0.832664 |
Target: 5'- aUCGACuc-GGaauCGACGCGAUCGGCg -3' miRNA: 3'- -AGUUGcauUCgcuGCUGCGCUGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 17507 | 0.66 | 0.832664 |
Target: 5'- -gGACGUcAGCGGC-ACGCcgacGCCGGCc -3' miRNA: 3'- agUUGCAuUCGCUGcUGCGc---UGGCUG- -5' |
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12137 | 5' | -52.7 | NC_003309.1 | + | 15334 | 0.66 | 0.832664 |
Target: 5'- gCAGCGUcGGCGAUGgcugcuGCGCGuCgGAUg -3' miRNA: 3'- aGUUGCAuUCGCUGC------UGCGCuGgCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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