miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12142 5' -61.7 NC_003309.1 + 3120 0.66 0.381809
Target:  5'- gCUCGAUCacaCCCGaCAgUGCCgugCCGUUCa -3'
miRNA:   3'- -GAGCUAGg--GGGUcGUgACGG---GGCGAG- -5'
12142 5' -61.7 NC_003309.1 + 21430 0.66 0.381809
Target:  5'- -gCG-UCCCCCaAGaUACguUGCCgCCGCUCa -3'
miRNA:   3'- gaGCuAGGGGG-UC-GUG--ACGG-GGCGAG- -5'
12142 5' -61.7 NC_003309.1 + 10396 0.66 0.364012
Target:  5'- gCUCGAUCgCCCuGCGCUuuggcgaGCgCCGCc- -3'
miRNA:   3'- -GAGCUAGgGGGuCGUGA-------CGgGGCGag -5'
12142 5' -61.7 NC_003309.1 + 20627 0.66 0.356563
Target:  5'- -aCGGUUCCCCGcGCGagagauCUGCCgCCGCg- -3'
miRNA:   3'- gaGCUAGGGGGU-CGU------GACGG-GGCGag -5'
12142 5' -61.7 NC_003309.1 + 36932 0.66 0.349221
Target:  5'- -aCGGcaagcUCCCCCAGUACaugggcucgaacagcGUCCCGUUCg -3'
miRNA:   3'- gaGCU-----AGGGGGUCGUGa--------------CGGGGCGAG- -5'
12142 5' -61.7 NC_003309.1 + 38125 0.66 0.348412
Target:  5'- -cCGuAUCCCgCGGCaAUUGCUCCGCg- -3'
miRNA:   3'- gaGC-UAGGGgGUCG-UGACGGGGCGag -5'
12142 5' -61.7 NC_003309.1 + 9910 0.67 0.295127
Target:  5'- uUCaGAUCCUgaCCGcGCaACUGCCCCGC-Cg -3'
miRNA:   3'- gAG-CUAGGG--GGU-CG-UGACGGGGCGaG- -5'
12142 5' -61.7 NC_003309.1 + 13017 0.67 0.295127
Target:  5'- -cCGGUCCCCa--CACcGCCCCGCc- -3'
miRNA:   3'- gaGCUAGGGGgucGUGaCGGGGCGag -5'
12142 5' -61.7 NC_003309.1 + 505 0.68 0.281115
Target:  5'- gUCGAg-CCCCAGCAUUGCgCCGa-- -3'
miRNA:   3'- gAGCUagGGGGUCGUGACGgGGCgag -5'
12142 5' -61.7 NC_003309.1 + 4357 0.68 0.274309
Target:  5'- cCUUGAUCCCCU---GCUGCucauCCCGCUUc -3'
miRNA:   3'- -GAGCUAGGGGGucgUGACG----GGGCGAG- -5'
12142 5' -61.7 NC_003309.1 + 4887 0.74 0.103985
Target:  5'- cCUCGAUCUgugCCAGCGCuUGCaCCCGCUg -3'
miRNA:   3'- -GAGCUAGGg--GGUCGUG-ACG-GGGCGAg -5'
12142 5' -61.7 NC_003309.1 + 24707 1.09 0.000205
Target:  5'- gCUCGAUCCCCCAGCACUGCCCCGCUCg -3'
miRNA:   3'- -GAGCUAGGGGGUCGUGACGGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.