miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12144 3' -60.9 NC_003309.1 + 37294 0.66 0.443975
Target:  5'- cGCCcuGAAUcuCGCCGGCGCGucgauGGCGGu- -3'
miRNA:   3'- -CGG--CUUGucGUGGCCGCGC-----UCGCCcu -5'
12144 3' -60.9 NC_003309.1 + 31944 0.66 0.410925
Target:  5'- cGCaCGAACAGUucuucgccgcccgcgGCCGGCGCcAGCGc-- -3'
miRNA:   3'- -CG-GCUUGUCG---------------UGGCCGCGcUCGCccu -5'
12144 3' -60.9 NC_003309.1 + 9736 0.67 0.381152
Target:  5'- cGCUGAuACAGCucgGCCGucGCGuCGAGCGGu- -3'
miRNA:   3'- -CGGCU-UGUCG---UGGC--CGC-GCUCGCCcu -5'
12144 3' -60.9 NC_003309.1 + 10753 0.68 0.332237
Target:  5'- cGCCGccucaAGCGCCGuccgucgcugcuGCGCGAGCGcGAg -3'
miRNA:   3'- -CGGCuug--UCGUGGC------------CGCGCUCGCcCU- -5'
12144 3' -60.9 NC_003309.1 + 31505 0.68 0.327607
Target:  5'- aGCCGAcgGCGGCcuacauugggugaucGCCGGCGgCGAaaGCGGc- -3'
miRNA:   3'- -CGGCU--UGUCG---------------UGGCCGC-GCU--CGCCcu -5'
12144 3' -60.9 NC_003309.1 + 26404 0.69 0.288093
Target:  5'- cGUCGAAacaguCGGCaACCGccGCGCGgacGGCGGGAu -3'
miRNA:   3'- -CGGCUU-----GUCG-UGGC--CGCGC---UCGCCCU- -5'
12144 3' -60.9 NC_003309.1 + 13981 0.69 0.274438
Target:  5'- uUCG-GCcGCACCGacgaCGCGGGCGGGAg -3'
miRNA:   3'- cGGCuUGuCGUGGCc---GCGCUCGCCCU- -5'
12144 3' -60.9 NC_003309.1 + 50215 0.69 0.267808
Target:  5'- aGCCGAGCaAGCAgacagUCGaGCGCGAGguucgaaaugcCGGGGa -3'
miRNA:   3'- -CGGCUUG-UCGU-----GGC-CGCGCUC-----------GCCCU- -5'
12144 3' -60.9 NC_003309.1 + 22475 0.7 0.248693
Target:  5'- cGCCGAcgcgGCGGCAUCGuGCGCG-GCGa-- -3'
miRNA:   3'- -CGGCU----UGUCGUGGC-CGCGCuCGCccu -5'
12144 3' -60.9 NC_003309.1 + 43423 0.71 0.198059
Target:  5'- aUUGAACAGCACCuGUGCGuGCuGGAa -3'
miRNA:   3'- cGGCUUGUCGUGGcCGCGCuCGcCCU- -5'
12144 3' -60.9 NC_003309.1 + 25859 1.1 0.000249
Target:  5'- cGCCGAACAGCACCGGCGCGAGCGGGAu -3'
miRNA:   3'- -CGGCUUGUCGUGGCCGCGCUCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.