miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
12145	3'	-61.3	NC_003309.1	+	34525	0.66	0.444566
	Target:  5'- cCCGUCGaUGUGGGCGGCc--GUCGAAUc -3' miRNA:   3'- -GGCGGC-GCGCCUGCCGcccUAGCUUA- -5'
12145	3'	-61.3	NC_003309.1	+	5049	0.66	0.42614
	Target:  5'- gUGCCGCGaCGG-CGGUcGGAUuCGggUc -3' miRNA:   3'- gGCGGCGC-GCCuGCCGcCCUA-GCuuA- -5'
12145	3'	-61.3	NC_003309.1	+	28943	0.67	0.389831
	Target:  5'- cCCGCCaccGUGCGGGCuuuuucauuuuugGGUGGGAccaaucUCGAu- -3' miRNA:   3'- -GGCGG---CGCGCCUG-------------CCGCCCU------AGCUua -5'
12145	3'	-61.3	NC_003309.1	+	37284	0.68	0.333478
	Target:  5'- cUCGCCgGCGCGucGAUGGCGG--UCGAGg -3' miRNA:   3'- -GGCGG-CGCGC--CUGCCGCCcuAGCUUa -5'
12145	3'	-61.3	NC_003309.1	+	22477	0.68	0.325824
	Target:  5'- aCCGCCGaCGCGG-CGGCaucgugcgcGGcGAUCGc-- -3' miRNA:   3'- -GGCGGC-GCGCCuGCCG---------CC-CUAGCuua -5'
12145	3'	-61.3	NC_003309.1	+	53310	0.68	0.310176
	Target:  5'- uCCGCCGgGCGGGCaacgacgGGCGGGccaccaccacGUCa--- -3' miRNA:   3'- -GGCGGCgCGCCUG-------CCGCCC----------UAGcuua -5'
12145	3'	-61.3	NC_003309.1	+	51768	0.68	0.303647
	Target:  5'- uCUGCaaGCGCGGAUGGUGGcacGUCGAc- -3' miRNA:   3'- -GGCGg-CGCGCCUGCCGCCc--UAGCUua -5'
12145	3'	-61.3	NC_003309.1	+	36573	0.69	0.289519
	Target:  5'- aCCGCCuucucgaacaucGuCGCGGcCGGCGcGAUCGAGa -3' miRNA:   3'- -GGCGG------------C-GCGCCuGCCGCcCUAGCUUa -5'
12145	3'	-61.3	NC_003309.1	+	9567	0.7	0.238156
	Target:  5'- aCGCCGCuGCGG-CGGCuugugcguauucGcGGAUCGAAc -3' miRNA:   3'- gGCGGCG-CGCCuGCCG------------C-CCUAGCUUa -5'
12145	3'	-61.3	NC_003309.1	+	26387	1.08	0.000372
	Target:  5'- aCCGCCGCGCGGACGGCGGGAUCGAAUg -3' miRNA:   3'- -GGCGGCGCGCCUGCCGCCCUAGCUUA- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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