miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12145 5' -52.7 NC_003309.1 + 44180 0.66 0.835351
Target:  5'- -------cGCGGCGCGCuGCcgcucggcguacGCGACGAg -3'
miRNA:   3'- uuuuaucuCGCUGCGCG-CG------------UGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 1094 0.66 0.834438
Target:  5'- -----uGGGCGAgCGCuugaccaucaacuGCGCugGACGGa -3'
miRNA:   3'- uuuuauCUCGCU-GCG-------------CGCGugCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 17715 0.66 0.826118
Target:  5'- --cGUAGAGCGACGuCGUcuuGC-CGuCGAa -3'
miRNA:   3'- uuuUAUCUCGCUGC-GCG---CGuGCuGCU- -5'
12145 5' -52.7 NC_003309.1 + 49537 0.66 0.826118
Target:  5'- uGAAGUAGAGauAgGCGCuCACGACa- -3'
miRNA:   3'- -UUUUAUCUCgcUgCGCGcGUGCUGcu -5'
12145 5' -52.7 NC_003309.1 + 42259 0.67 0.776942
Target:  5'- ----cAGAGCGAuuucgagugcCGCGgGCAUGGCa- -3'
miRNA:   3'- uuuuaUCUCGCU----------GCGCgCGUGCUGcu -5'
12145 5' -52.7 NC_003309.1 + 33054 0.67 0.756084
Target:  5'- ---uUAuuGCGACuCGCGCACGAuCGAc -3'
miRNA:   3'- uuuuAUcuCGCUGcGCGCGUGCU-GCU- -5'
12145 5' -52.7 NC_003309.1 + 11973 0.68 0.734692
Target:  5'- -------cGCGGCGCGCGcCGCGuCGGc -3'
miRNA:   3'- uuuuaucuCGCUGCGCGC-GUGCuGCU- -5'
12145 5' -52.7 NC_003309.1 + 52405 0.68 0.723827
Target:  5'- -----cGAGCuuGGCGCaaucaucuGCGCAUGACGAa -3'
miRNA:   3'- uuuuauCUCG--CUGCG--------CGCGUGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 22472 0.68 0.701821
Target:  5'- -----cGAcGCGGCGgcauCGUGCGCGGCGAu -3'
miRNA:   3'- uuuuauCU-CGCUGC----GCGCGUGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 31376 0.68 0.690705
Target:  5'- -cAAUGGGGCGA-GUGgGCACcGCGAa -3'
miRNA:   3'- uuUUAUCUCGCUgCGCgCGUGcUGCU- -5'
12145 5' -52.7 NC_003309.1 + 11782 0.71 0.533889
Target:  5'- -----cGAGCGACuuguacgcgucgGCGCGCcCGGCGAu -3'
miRNA:   3'- uuuuauCUCGCUG------------CGCGCGuGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 23983 0.73 0.439525
Target:  5'- -----cGAGCGgaACGCGC-CGCGACGAu -3'
miRNA:   3'- uuuuauCUCGC--UGCGCGcGUGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 7798 0.75 0.330002
Target:  5'- -----cGAGCGcgccauguACGCGCGuCACGACGAa -3'
miRNA:   3'- uuuuauCUCGC--------UGCGCGC-GUGCUGCU- -5'
12145 5' -52.7 NC_003309.1 + 5332 0.76 0.298251
Target:  5'- ----gAGAGCGgcaGCGUGCGCGCGcCGAg -3'
miRNA:   3'- uuuuaUCUCGC---UGCGCGCGUGCuGCU- -5'
12145 5' -52.7 NC_003309.1 + 26353 1.07 0.002442
Target:  5'- cAAAAUAGAGCGACGCGCGCACGACGAc -3'
miRNA:   3'- -UUUUAUCUCGCUGCGCGCGUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.