miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12146 5' -57.6 NC_003309.1 + 26492 1.1 0.000531
Target:  5'- aCGCAGAGGCUUGGCUCGCGCGAACGGc -3'
miRNA:   3'- -GCGUCUCCGAACCGAGCGCGCUUGCC- -5'
12146 5' -57.6 NC_003309.1 + 668 0.73 0.247815
Target:  5'- aCGCAGGGcGCUUGccacgaacgacGuCUCGCGCGAACu- -3'
miRNA:   3'- -GCGUCUC-CGAAC-----------C-GAGCGCGCUUGcc -5'
12146 5' -57.6 NC_003309.1 + 9027 0.7 0.383154
Target:  5'- aGCGGAGGCcuggGGUUCG-GCGGAaGGc -3'
miRNA:   3'- gCGUCUCCGaa--CCGAGCgCGCUUgCC- -5'
12146 5' -57.6 NC_003309.1 + 28811 0.68 0.497044
Target:  5'- cCGCGGgauAGaGCUgcaacaUCGCGCGAGCGGc -3'
miRNA:   3'- -GCGUC---UC-CGAaccg--AGCGCGCUUGCC- -5'
12146 5' -57.6 NC_003309.1 + 15336 0.67 0.559424
Target:  5'- cCGCAGcgucGGCgaUGGCUgcUGCGCGu-CGGa -3'
miRNA:   3'- -GCGUCu---CCGa-ACCGA--GCGCGCuuGCC- -5'
12146 5' -57.6 NC_003309.1 + 37248 0.66 0.576459
Target:  5'- gGCAGGGGCaaGGCggcgcuacagcagCGCGUcgaGGACGa -3'
miRNA:   3'- gCGUCUCCGaaCCGa------------GCGCG---CUUGCc -5'
12146 5' -57.6 NC_003309.1 + 9737 0.66 0.612994
Target:  5'- cCGCuGAuacaGCUcGGCcgUCGCGuCGAGCGGu -3'
miRNA:   3'- -GCGuCUc---CGAaCCG--AGCGC-GCUUGCC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.