Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 26492 | 1.1 | 0.000531 |
Target: 5'- aCGCAGAGGCUUGGCUCGCGCGAACGGc -3' miRNA: 3'- -GCGUCUCCGAACCGAGCGCGCUUGCC- -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 668 | 0.73 | 0.247815 |
Target: 5'- aCGCAGGGcGCUUGccacgaacgacGuCUCGCGCGAACu- -3' miRNA: 3'- -GCGUCUC-CGAAC-----------C-GAGCGCGCUUGcc -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 9027 | 0.7 | 0.383154 |
Target: 5'- aGCGGAGGCcuggGGUUCG-GCGGAaGGc -3' miRNA: 3'- gCGUCUCCGaa--CCGAGCgCGCUUgCC- -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 28811 | 0.68 | 0.497044 |
Target: 5'- cCGCGGgauAGaGCUgcaacaUCGCGCGAGCGGc -3' miRNA: 3'- -GCGUC---UC-CGAaccg--AGCGCGCUUGCC- -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 15336 | 0.67 | 0.559424 |
Target: 5'- cCGCAGcgucGGCgaUGGCUgcUGCGCGu-CGGa -3' miRNA: 3'- -GCGUCu---CCGa-ACCGA--GCGCGCuuGCC- -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 37248 | 0.66 | 0.576459 |
Target: 5'- gGCAGGGGCaaGGCggcgcuacagcagCGCGUcgaGGACGa -3' miRNA: 3'- gCGUCUCCGaaCCGa------------GCGCG---CUUGCc -5' |
|||||||
12146 | 5' | -57.6 | NC_003309.1 | + | 9737 | 0.66 | 0.612994 |
Target: 5'- cCGCuGAuacaGCUcGGCcgUCGCGuCGAGCGGu -3' miRNA: 3'- -GCGuCUc---CGAaCCG--AGCGC-GCUUGCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home