miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1215 5' -49.3 NC_001266.1 + 127763 0.66 0.998295
Target:  5'- gAGUaugugGUAAAUGGAcGUcgCUGCGUCGa -3'
miRNA:   3'- gUCG-----CAUUUACCUaCGuaGAUGCGGU- -5'
1215 5' -49.3 NC_001266.1 + 6546 0.68 0.990086
Target:  5'- uGGCGUAGAUGcAUcCAUUUACGCUg -3'
miRNA:   3'- gUCGCAUUUACcUAcGUAGAUGCGGu -5'
1215 5' -49.3 NC_001266.1 + 153312 0.68 0.990086
Target:  5'- uGGCGUAGAUGcAUcCAUUUACGCUg -3'
miRNA:   3'- gUCGCAUUUACcUAcGUAGAUGCGGu -5'
1215 5' -49.3 NC_001266.1 + 105238 0.69 0.981379
Target:  5'- aCAGCGUcuuucuucAAGUGGGUGUAUUuuaggUACGCa- -3'
miRNA:   3'- -GUCGCA--------UUUACCUACGUAG-----AUGCGgu -5'
1215 5' -49.3 NC_001266.1 + 148112 0.71 0.944051
Target:  5'- -uGuCGUAAAUGGAUaUAUCUACGUCGu -3'
miRNA:   3'- guC-GCAUUUACCUAcGUAGAUGCGGU- -5'
1215 5' -49.3 NC_001266.1 + 11746 0.71 0.944051
Target:  5'- -uGuCGUAAAUGGAUaUAUCUACGUCGu -3'
miRNA:   3'- guC-GCAUUUACCUAcGUAGAUGCGGU- -5'
1215 5' -49.3 NC_001266.1 + 153127 1.09 0.011778
Target:  5'- gCAGCGUAAAUGGAUGCAUCUACGCCAu -3'
miRNA:   3'- -GUCGCAUUUACCUACGUAGAUGCGGU- -5'
1215 5' -49.3 NC_001266.1 + 6731 1.09 0.011778
Target:  5'- gCAGCGUAAAUGGAUGCAUCUACGCCAu -3'
miRNA:   3'- -GUCGCAUUUACCUACGUAGAUGCGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.