miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12151 3' -56.2 NC_003309.1 + 10374 0.66 0.602597
Target:  5'- cGAGCGCC-GC-CUGCGCCGccuCGUg-- -3'
miRNA:   3'- -UUCGUGGaCGaGAUGCGGCu--GCGuuu -5'
12151 3' -56.2 NC_003309.1 + 22368 0.66 0.584628
Target:  5'- -cGCgGCCUGCUCgucggcaagccgaugUGCGCCGAucaggugcucgaCGCAAGc -3'
miRNA:   3'- uuCG-UGGACGAG---------------AUGCGGCU------------GCGUUU- -5'
12151 3' -56.2 NC_003309.1 + 20167 0.67 0.514167
Target:  5'- cGAGCACCUGCgauuCGaCGACGCc-- -3'
miRNA:   3'- -UUCGUGGACGagauGCgGCUGCGuuu -5'
12151 3' -56.2 NC_003309.1 + 20277 0.67 0.482314
Target:  5'- -cGCACCga-UCaGCGCCuGACGCAAGa -3'
miRNA:   3'- uuCGUGGacgAGaUGCGG-CUGCGUUU- -5'
12151 3' -56.2 NC_003309.1 + 18798 0.68 0.471909
Target:  5'- -cGCGCCUGCgcgaUGC-CCGACgGCAAGa -3'
miRNA:   3'- uuCGUGGACGag--AUGcGGCUG-CGUUU- -5'
12151 3' -56.2 NC_003309.1 + 10946 0.69 0.421692
Target:  5'- cGAGCGCCg--UCUGCGCCGuCGCc-- -3'
miRNA:   3'- -UUCGUGGacgAGAUGCGGCuGCGuuu -5'
12151 3' -56.2 NC_003309.1 + 45811 0.69 0.402524
Target:  5'- aGAGCACCgGCUCaagcACGCCcugcGCGCGAu -3'
miRNA:   3'- -UUCGUGGaCGAGa---UGCGGc---UGCGUUu -5'
12151 3' -56.2 NC_003309.1 + 629 0.7 0.3571
Target:  5'- uGAGCcCCUGCUCUACGC--GCGgGAAa -3'
miRNA:   3'- -UUCGuGGACGAGAUGCGgcUGCgUUU- -5'
12151 3' -56.2 NC_003309.1 + 31532 0.7 0.339965
Target:  5'- cAAGCGCCaGCUCgaacUACGCCGGC-CAGc -3'
miRNA:   3'- -UUCGUGGaCGAG----AUGCGGCUGcGUUu -5'
12151 3' -56.2 NC_003309.1 + 35040 0.75 0.170597
Target:  5'- cGAGCGCCUGUgcgACGCCGACGaCGu- -3'
miRNA:   3'- -UUCGUGGACGagaUGCGGCUGC-GUuu -5'
12151 3' -56.2 NC_003309.1 + 32571 1.04 0.001256
Target:  5'- cAAGCACCUGCUCUACGCCGACGCAAAg -3'
miRNA:   3'- -UUCGUGGACGAGAUGCGGCUGCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.