miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12152 3' -59.2 NC_003309.1 + 28837 0.66 0.506381
Target:  5'- cGGUGcugGCGCuGCaaccaUGUCGCCcGCGGGa -3'
miRNA:   3'- uCCGCa--CGCG-CG-----ACAGCGGaUGCUCg -5'
12152 3' -59.2 NC_003309.1 + 8816 0.66 0.506381
Target:  5'- -uGCGUGUGCGCgucGUCGCUcGCacGCg -3'
miRNA:   3'- ucCGCACGCGCGa--CAGCGGaUGcuCG- -5'
12152 3' -59.2 NC_003309.1 + 3548 0.66 0.486166
Target:  5'- cGGCGUaucGCGaCGaCUGaUCGCC-GCGcAGCa -3'
miRNA:   3'- uCCGCA---CGC-GC-GAC-AGCGGaUGC-UCG- -5'
12152 3' -59.2 NC_003309.1 + 1705 0.66 0.466343
Target:  5'- cGaGCuUGCGCGCcaUGUCGagcGCGAGCa -3'
miRNA:   3'- uC-CGcACGCGCG--ACAGCggaUGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 19978 0.67 0.446946
Target:  5'- cGGuCGUGaucUGCUG-CGCCUGCGcGCg -3'
miRNA:   3'- uCC-GCACgc-GCGACaGCGGAUGCuCG- -5'
12152 3' -59.2 NC_003309.1 + 18548 0.67 0.437417
Target:  5'- ---gGUGCGC-CUG-CGCCUGCGAcguGCa -3'
miRNA:   3'- uccgCACGCGcGACaGCGGAUGCU---CG- -5'
12152 3' -59.2 NC_003309.1 + 46783 0.67 0.437417
Target:  5'- uGGcCGcUGCGCgaGCUGUCaCCgcaACGGGCg -3'
miRNA:   3'- uCC-GC-ACGCG--CGACAGcGGa--UGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 44180 0.67 0.409549
Target:  5'- -cGCG-GCGCGCUGcCGCUcgGCGuacGCg -3'
miRNA:   3'- ucCGCaCGCGCGACaGCGGa-UGCu--CG- -5'
12152 3' -59.2 NC_003309.1 + 1204 0.68 0.382814
Target:  5'- cGGCGa-CGCGCcGUCGCCUGgGuuGCc -3'
miRNA:   3'- uCCGCacGCGCGaCAGCGGAUgCu-CG- -5'
12152 3' -59.2 NC_003309.1 + 32863 0.68 0.365647
Target:  5'- uGGGCGauccagaagGCGUGCU-UCGCgagCUGCGGGCc -3'
miRNA:   3'- -UCCGCa--------CGCGCGAcAGCG---GAUGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 13812 0.68 0.355605
Target:  5'- uGGUGUGUGCgacgcgguuGUUGUCGCCgccgcuuccgcCGGGCg -3'
miRNA:   3'- uCCGCACGCG---------CGACAGCGGau---------GCUCG- -5'
12152 3' -59.2 NC_003309.1 + 5323 0.69 0.349019
Target:  5'- -aGCGUGCGCGCgccgaGCUUGCGAa- -3'
miRNA:   3'- ucCGCACGCGCGacag-CGGAUGCUcg -5'
12152 3' -59.2 NC_003309.1 + 47493 0.69 0.340909
Target:  5'- gAGGCG-GCGCaGCgacaccuUCGCCgcCGGGCg -3'
miRNA:   3'- -UCCGCaCGCG-CGac-----AGCGGauGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 13115 0.69 0.328219
Target:  5'- aAGGUGUGCGCGCa--CGCCcggcugcgacaccacUGCGGcGCg -3'
miRNA:   3'- -UCCGCACGCGCGacaGCGG---------------AUGCU-CG- -5'
12152 3' -59.2 NC_003309.1 + 46381 0.7 0.280986
Target:  5'- -aGCGcuCGC-CUGUCGCCUccGCGAGCg -3'
miRNA:   3'- ucCGCacGCGcGACAGCGGA--UGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 5161 0.74 0.163409
Target:  5'- gAGGCGaGCuGCGC-GUCGCCgcgcgccgccGCGAGCg -3'
miRNA:   3'- -UCCGCaCG-CGCGaCAGCGGa---------UGCUCG- -5'
12152 3' -59.2 NC_003309.1 + 32746 1.11 0.000294
Target:  5'- cAGGCGUGCGCGCUGUCGCCUACGAGCu -3'
miRNA:   3'- -UCCGCACGCGCGACAGCGGAUGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.