Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 16089 | 0.66 | 0.853134 |
|
Target: 5'- uUCGCUCGgcu-GUGCcga-CGCCCCCg -3' miRNA: 3'- -AGCGAGUauucUACGcaacGUGGGGG- -5' |
|||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 32380 | 0.67 | 0.826118 |
|
Target: 5'- cUCGCUgCGgcGGccGUGUccugUGCAUCCCCc -3' miRNA: 3'- -AGCGA-GUauUCuaCGCA----ACGUGGGGG- -5' |
|||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 51705 | 0.68 | 0.776942 |
|
Target: 5'- uUCGC-CGUGcGAgGCGUgauguaGCGCCCCg -3' miRNA: 3'- -AGCGaGUAUuCUaCGCAa-----CGUGGGGg -5' |
|||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 11534 | 0.7 | 0.623168 |
|
Target: 5'- aUCGC-CGUGAG-UGC-UUGCGCgCCCu -3' miRNA: 3'- -AGCGaGUAUUCuACGcAACGUGgGGG- -5' |
|||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 13122 | 0.74 | 0.439525 |
|
Target: 5'- aUCGCUCA--AGGUGUGcgcGCACgCCCg -3' miRNA: 3'- -AGCGAGUauUCUACGCaa-CGUGgGGG- -5' |
|||||||
| 12152 | 5' | -52.1 | NC_003309.1 | + | 32711 | 1.14 | 0.000943 |
|
Target: 5'- cUCGCUCAUAAGAUGCGUUGCACCCCCg -3' miRNA: 3'- -AGCGAGUAUUCUACGCAACGUGGGGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home