miRNA display CGI


Results 1 - 3 of 3 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 3' -50.9 NC_003309.1 + 32968 0.69 0.780624
Target:  5'- cGCGCGCUGag-GCGCGagagcGCGAcgaCCCu -3'
miRNA:   3'- -UGCGCGACaaaCGUGCa----CGUUaa-GGG- -5'
12157 3' -50.9 NC_003309.1 + 13237 0.76 0.391701
Target:  5'- gGCGCGCUGaccgagaucccgccgUUGCGCGccgGCGAaUCCCc -3'
miRNA:   3'- -UGCGCGACa--------------AACGUGCa--CGUUaAGGG- -5'
12157 3' -50.9 NC_003309.1 + 35401 1.11 0.001731
Target:  5'- cACGCGCUGUUUGCACGUGCAAUUCCCc -3'
miRNA:   3'- -UGCGCGACAAACGUGCACGUUAAGGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.