Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12157 | 5' | -52.5 | NC_003309.1 | + | 20060 | 0.66 | 0.862801 |
Target: 5'- gCCGCGAcaCGCcCGuucagguCGGCGUACGACu- -3' miRNA: 3'- -GGCGCUa-GCGuGU-------GCCGUAUGUUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 46581 | 0.66 | 0.863617 |
Target: 5'- cUCGCGAauucCGCA-AUGGCGUcgauCGACGGa -3' miRNA: 3'- -GGCGCUa---GCGUgUGCCGUAu---GUUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 31484 | 0.66 | 0.863617 |
Target: 5'- -gGUGAUCGCcgGCGGCGaa-AGCGGc -3' miRNA: 3'- ggCGCUAGCGugUGCCGUaugUUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 12790 | 0.66 | 0.863617 |
Target: 5'- gCCGCGAaCGaCACGagugcauccuCGGCAUu--GCGGa -3' miRNA: 3'- -GGCGCUaGC-GUGU----------GCCGUAuguUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 43276 | 0.66 | 0.879422 |
Target: 5'- gCCGCG-UCGCAgcacucaACGGCGcucgGCAACu- -3' miRNA: 3'- -GGCGCuAGCGUg------UGCCGUa---UGUUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 45541 | 0.66 | 0.879422 |
Target: 5'- uCCGCGAgaaggUCGUAUugACGGCc-GCcGCGGc -3' miRNA: 3'- -GGCGCU-----AGCGUG--UGCCGuaUGuUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 12629 | 0.66 | 0.886944 |
Target: 5'- gCCGCGcUCGCGCGCGaccuGCuccGCcuCGGc -3' miRNA: 3'- -GGCGCuAGCGUGUGC----CGua-UGuuGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 9702 | 0.66 | 0.886944 |
Target: 5'- gCCGUGuGUCGCGCGCGauGC--GCAGCa- -3' miRNA: 3'- -GGCGC-UAGCGUGUGC--CGuaUGUUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 26345 | 0.66 | 0.894204 |
Target: 5'- -aGCGAcgCGCGCACG----ACGACGGc -3' miRNA: 3'- ggCGCUa-GCGUGUGCcguaUGUUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 5381 | 0.66 | 0.894204 |
Target: 5'- gCCGaCGAUCGCGCcacccuucaGGCGcGgGAUGGu -3' miRNA: 3'- -GGC-GCUAGCGUGug-------CCGUaUgUUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 43792 | 0.66 | 0.894204 |
Target: 5'- gCGCGAgCGCGCcCGGCA---AACGu -3' miRNA: 3'- gGCGCUaGCGUGuGCCGUaugUUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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