Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12157 | 5' | -52.5 | NC_003309.1 | + | 5584 | 0.68 | 0.804946 |
Target: 5'- gUCGCGAaugaacgccuugucuUCGCGCGCGcCGaucGCGGCGGu -3' miRNA: 3'- -GGCGCU---------------AGCGUGUGCcGUa--UGUUGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 31001 | 0.68 | 0.81065 |
Target: 5'- cUCGCcaGAUCGCGaGCGGC-UACAACc- -3' miRNA: 3'- -GGCG--CUAGCGUgUGCCGuAUGUUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 37310 | 0.67 | 0.817219 |
Target: 5'- gCGCGAUCGUGCGCGacgcccugaaucucGCcgGCGcgucgaugGCGGu -3' miRNA: 3'- gGCGCUAGCGUGUGC--------------CGuaUGU--------UGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 16689 | 0.67 | 0.829163 |
Target: 5'- uUCGCGGUCGaugaaACGGCGagACGAUGa -3' miRNA: 3'- -GGCGCUAGCgug--UGCCGUa-UGUUGCc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 39245 | 0.67 | 0.836339 |
Target: 5'- cCCGCGGaucagcaUCGCGCACgaaGGUcgACGaagugcucgccgaACGGg -3' miRNA: 3'- -GGCGCU-------AGCGUGUG---CCGuaUGU-------------UGCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 32930 | 0.67 | 0.838111 |
Target: 5'- aUCGCGGcaaGCAacaACGGCuAUGCGGcCGGa -3' miRNA: 3'- -GGCGCUag-CGUg--UGCCG-UAUGUU-GCC- -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 30902 | 0.67 | 0.838111 |
Target: 5'- uCUGCGAaagGCu--CGGCGUACAACGu -3' miRNA: 3'- -GGCGCUag-CGuguGCCGUAUGUUGCc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 28812 | 0.67 | 0.84163 |
Target: 5'- cCCGCGGgauagagcugcaacaUCGCGCgaGCGGCuu-CAGCa- -3' miRNA: 3'- -GGCGCU---------------AGCGUG--UGCCGuauGUUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 21773 | 0.67 | 0.846842 |
Target: 5'- aUCGUGAugcUCcaguuCACGCaGGCGUGCAGCGa -3' miRNA: 3'- -GGCGCU---AGc----GUGUG-CCGUAUGUUGCc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 7222 | 0.67 | 0.846842 |
Target: 5'- cCCGCGuUUGCGCGCcGGCAgUACcGCc- -3' miRNA: 3'- -GGCGCuAGCGUGUG-CCGU-AUGuUGcc -5' |
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12157 | 5' | -52.5 | NC_003309.1 | + | 43792 | 0.66 | 0.894204 |
Target: 5'- gCGCGAgCGCGCcCGGCA---AACGu -3' miRNA: 3'- gGCGCUaGCGUGuGCCGUaugUUGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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