miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12157 5' -52.5 NC_003309.1 + 16689 0.67 0.829163
Target:  5'- uUCGCGGUCGaugaaACGGCGagACGAUGa -3'
miRNA:   3'- -GGCGCUAGCgug--UGCCGUa-UGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 37310 0.67 0.817219
Target:  5'- gCGCGAUCGUGCGCGacgcccugaaucucGCcgGCGcgucgaugGCGGu -3'
miRNA:   3'- gGCGCUAGCGUGUGC--------------CGuaUGU--------UGCC- -5'
12157 5' -52.5 NC_003309.1 + 31001 0.68 0.81065
Target:  5'- cUCGCcaGAUCGCGaGCGGC-UACAACc- -3'
miRNA:   3'- -GGCG--CUAGCGUgUGCCGuAUGUUGcc -5'
12157 5' -52.5 NC_003309.1 + 5584 0.68 0.804946
Target:  5'- gUCGCGAaugaacgccuugucuUCGCGCGCGcCGaucGCGGCGGu -3'
miRNA:   3'- -GGCGCU---------------AGCGUGUGCcGUa--UGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 19835 0.68 0.781496
Target:  5'- uCgGCGAUCGCcgacuGCAacgaccagacgcCGGCAUugAGCGu -3'
miRNA:   3'- -GgCGCUAGCG-----UGU------------GCCGUAugUUGCc -5'
12157 5' -52.5 NC_003309.1 + 51567 0.68 0.781496
Target:  5'- aCCGCGAUUGC-CuCGGCAacucgaaGCAuCGGc -3'
miRNA:   3'- -GGCGCUAGCGuGuGCCGUa------UGUuGCC- -5'
12157 5' -52.5 NC_003309.1 + 18725 0.68 0.761264
Target:  5'- gCGUGAUCGUcucGC-CGGC-UGCGgcGCGGa -3'
miRNA:   3'- gGCGCUAGCG---UGuGCCGuAUGU--UGCC- -5'
12157 5' -52.5 NC_003309.1 + 17756 0.69 0.750942
Target:  5'- gCCGUuuuUCGCGCGCGGCAgcuCGAUc- -3'
miRNA:   3'- -GGCGcu-AGCGUGUGCCGUau-GUUGcc -5'
12157 5' -52.5 NC_003309.1 + 19784 0.69 0.740499
Target:  5'- cCCGCGuaaaucGUCGCGuCGcCGGCcauCGGCGGg -3'
miRNA:   3'- -GGCGC------UAGCGU-GU-GCCGuauGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 19936 0.69 0.738397
Target:  5'- gCGCGAUCGCuuccguuugcacCGCGGCGcuCAGCaGGu -3'
miRNA:   3'- gGCGCUAGCGu-----------GUGCCGUauGUUG-CC- -5'
12157 5' -52.5 NC_003309.1 + 6751 0.69 0.729946
Target:  5'- aCgGCGcgCGCAUACGGC---CAACGu -3'
miRNA:   3'- -GgCGCuaGCGUGUGCCGuauGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 1221 0.69 0.729946
Target:  5'- uCCaCGAUCGCACACGacg-GCGACGc -3'
miRNA:   3'- -GGcGCUAGCGUGUGCcguaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 8556 0.7 0.697744
Target:  5'- uCUGCGAUCGgggaguUACGCcGCcgGCGGCGGc -3'
miRNA:   3'- -GGCGCUAGC------GUGUGcCGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 10638 0.7 0.694486
Target:  5'- cCCGCGAU-GCGCGCGccgauuuccugacuGCcgGCAACGu -3'
miRNA:   3'- -GGCGCUAgCGUGUGC--------------CGuaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 10491 0.7 0.675936
Target:  5'- aUCGCGAggcuuUCGCGCaucGCGcGCAUGCcGCGa -3'
miRNA:   3'- -GGCGCU-----AGCGUG---UGC-CGUAUGuUGCc -5'
12157 5' -52.5 NC_003309.1 + 43968 0.7 0.664964
Target:  5'- -aGCGGUCGCGCAC-GCucucggGCAuCGGg -3'
miRNA:   3'- ggCGCUAGCGUGUGcCGua----UGUuGCC- -5'
12157 5' -52.5 NC_003309.1 + 16929 0.7 0.653962
Target:  5'- gUCGCGAUCGCGC-CGaCA-GCGACGa -3'
miRNA:   3'- -GGCGCUAGCGUGuGCcGUaUGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 49002 0.71 0.628596
Target:  5'- cCCGUGG-CGCgauugguucgagugGCACGGC--ACAACGGu -3'
miRNA:   3'- -GGCGCUaGCG--------------UGUGCCGuaUGUUGCC- -5'
12157 5' -52.5 NC_003309.1 + 11975 0.71 0.620874
Target:  5'- gCCGCGG-CGCGCGCcGCGU-CGGCGu -3'
miRNA:   3'- -GGCGCUaGCGUGUGcCGUAuGUUGCc -5'
12157 5' -52.5 NC_003309.1 + 34433 0.71 0.620874
Target:  5'- aCCGUGGagaGCGCgAUGGCGUAguACGGc -3'
miRNA:   3'- -GGCGCUag-CGUG-UGCCGUAUguUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.