miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1216 5' -47.4 NC_001266.1 + 29984 0.66 0.99981
Target:  5'- ---gACUCUuucuauCUCGuGGAUGUGUCCGu -3'
miRNA:   3'- cuuaUGAGG------GAGCuCUUACAUAGGUc -5'
1216 5' -47.4 NC_001266.1 + 1726 0.66 0.999689
Target:  5'- ---aACUCCUUCGuuuuGAucacuucguUGUGUCCAGc -3'
miRNA:   3'- cuuaUGAGGGAGCu---CUu--------ACAUAGGUC- -5'
1216 5' -47.4 NC_001266.1 + 158132 0.66 0.999689
Target:  5'- ---aACUCCUUCGuuuuGAucacuucguUGUGUCCAGc -3'
miRNA:   3'- cuuaUGAGGGAGCu---CUu--------ACAUAGGUC- -5'
1216 5' -47.4 NC_001266.1 + 139028 0.67 0.999058
Target:  5'- ---cGCUUCCUCGGGugucAUGUGUUCGu -3'
miRNA:   3'- cuuaUGAGGGAGCUCu---UACAUAGGUc -5'
1216 5' -47.4 NC_001266.1 + 14705 0.68 0.998846
Target:  5'- aAAUACUCCCacgCGGGAggAUGU-UCCAc -3'
miRNA:   3'- cUUAUGAGGGa--GCUCU--UACAuAGGUc -5'
1216 5' -47.4 NC_001266.1 + 1891 0.7 0.991311
Target:  5'- aGAGUAuCUCCCgcUCGc--GUGUGUCCAGa -3'
miRNA:   3'- -CUUAU-GAGGG--AGCucuUACAUAGGUC- -5'
1216 5' -47.4 NC_001266.1 + 157967 0.7 0.991311
Target:  5'- aGAGUAuCUCCCgcUCGc--GUGUGUCCAGa -3'
miRNA:   3'- -CUUAU-GAGGG--AGCucuUACAUAGGUC- -5'
1216 5' -47.4 NC_001266.1 + 52236 1.11 0.016209
Target:  5'- aGAAUACUCCCUCGAGAAUGUAUCCAGa -3'
miRNA:   3'- -CUUAUGAGGGAGCUCUUACAUAGGUC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.