miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12160 3' -52.8 NC_003309.1 + 43965 0.66 0.847888
Target:  5'- gGUCg-CGCaCGC--UCUCGGGCAUCGg -3'
miRNA:   3'- aCAGagGUG-GCGgaAGAGCUUGUAGC- -5'
12160 3' -52.8 NC_003309.1 + 10439 0.66 0.839069
Target:  5'- cGcCUCCGCCGCCUgcgCGuuuuGCAgcuUCGc -3'
miRNA:   3'- aCaGAGGUGGCGGAagaGCu---UGU---AGC- -5'
12160 3' -52.8 NC_003309.1 + 24024 0.66 0.839069
Target:  5'- cGgCUCCACCGCCcgUCgUCGAcGCAg-- -3'
miRNA:   3'- aCaGAGGUGGCGGa-AG-AGCU-UGUagc -5'
12160 3' -52.8 NC_003309.1 + 47444 0.66 0.830026
Target:  5'- -uUCUCCGCCGCUUUCgccucgcggugcUCGcACcaGUCGa -3'
miRNA:   3'- acAGAGGUGGCGGAAG------------AGCuUG--UAGC- -5'
12160 3' -52.8 NC_003309.1 + 43368 0.66 0.820769
Target:  5'- aGUgCUCgACgCGCCcgUCuUCGAGCGUCu -3'
miRNA:   3'- aCA-GAGgUG-GCGGa-AG-AGCUUGUAGc -5'
12160 3' -52.8 NC_003309.1 + 11447 0.67 0.791812
Target:  5'- cGUCgCCGCCGUCUguugCGGACA-CGa -3'
miRNA:   3'- aCAGaGGUGGCGGAaga-GCUUGUaGC- -5'
12160 3' -52.8 NC_003309.1 + 15882 0.67 0.77163
Target:  5'- cGcCUCgAUCGCCUUCUUGAucuguuCGUCc -3'
miRNA:   3'- aCaGAGgUGGCGGAAGAGCUu-----GUAGc -5'
12160 3' -52.8 NC_003309.1 + 22491 0.68 0.740275
Target:  5'- gGUCgacggcggCCACCGCCgacgCGGcgGCAUCGu -3'
miRNA:   3'- aCAGa-------GGUGGCGGaagaGCU--UGUAGC- -5'
12160 3' -52.8 NC_003309.1 + 14532 0.68 0.729582
Target:  5'- -aUUUCCugCGCCUgcgUGAACGUCu -3'
miRNA:   3'- acAGAGGugGCGGAagaGCUUGUAGc -5'
12160 3' -52.8 NC_003309.1 + 45263 0.68 0.729582
Target:  5'- gGUCgaaugccggCCGCCGCgUgcgcCUCGAauACGUCGg -3'
miRNA:   3'- aCAGa--------GGUGGCGgAa---GAGCU--UGUAGC- -5'
12160 3' -52.8 NC_003309.1 + 46912 0.7 0.641416
Target:  5'- -cUCgCCGCCGCCUUC-CGGAUAgcgcUCGa -3'
miRNA:   3'- acAGaGGUGGCGGAAGaGCUUGU----AGC- -5'
12160 3' -52.8 NC_003309.1 + 24277 0.7 0.59676
Target:  5'- ----aCCGCCGCCUgcuUCUCGggUguGUCGa -3'
miRNA:   3'- acagaGGUGGCGGA---AGAGCuuG--UAGC- -5'
12160 3' -52.8 NC_003309.1 + 11801 0.71 0.530867
Target:  5'- uUGUCggCgAUCGCCUUUUCGAgcgacuuguacGCGUCGg -3'
miRNA:   3'- -ACAGa-GgUGGCGGAAGAGCU-----------UGUAGC- -5'
12160 3' -52.8 NC_003309.1 + 36581 1.09 0.001902
Target:  5'- cUGUCUCCACCGCCUUCUCGAACAUCGu -3'
miRNA:   3'- -ACAGAGGUGGCGGAAGAGCUUGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.